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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcttactattattttctgcttatgtctcatcttgtaattgtattgtcatgttctctgagagaaaaggcgaaaaaaaatcccctgaaatctctttcctgcttcgattcttagcagACATCACCAACATGGACGGTGGCAAGCTCGAATTGGCAGAGTTGCAGGGAACAAGGACCTTTATCTTGGGACATTCA

Basic information

species Vitis vinifera
transcript Vv07s0151g00440.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0151g00440.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os03g12950.1 (Oryza sativa), 3'ss of exon 7
gtcttactattattttctgcttatgtctcatcttgtaattgtattgtcatgttctctgagagaaaaggcgaaaaaaaatcccctgaaatctctttcctgcttcgattcttagcagACATCACCAACATGGACGGTGGCAAGCTCGAATTGGCAGAGTTGCAGGGAACAAGGACCTTTATCTTGGGACATTCA
    |  | | ||||| |||| |     ||| | | | || | |||  |  |  |   |||  | |  || |  || || |  |   |     ||     ||   | | | |||| |||||||| |||||| | ||||||||||| |||||||| ||||| || ||||||||| | ||||| || || ||||
---gtgtt-tcattttgtgctgaacaagcatat-gcatttttcttgataattatttcaagaacacattcgcatcaagatacaatctcactgtgttaaatgttaactgcattgcagGCATCACCAGCATGGAAGATGGCAAGCTCGGATTGGCAGGGTTGCTGGCAACAAGGACTTGTATCTCGGCACTTTCA

upper sequence: Vv07s0151g00440.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA17G17010.1 (Glycine max), 3'ss of exon 7
--------gtcttactattattttctgcttatgtctcatcttgt-aattgtattgtcatgttctctgagagaaaaggcgaaaaaaaatcccctgaaatctcttt---cctgcttcgattcttagcagACATCACCAACATGGACGGTGGCAAGCTCGAATTGGCAGAGTTGCAGGGAACAAGGACCTTTATCTTGGGACATTCA
        | |  || |  | |   |   ||  |   || |  | | |  |||  | || || | |      | |   |||||  ||    || || | | ||    | || |||  ||  ||||||||| |||||||||||| ||||||||||||||||||| ||||| || || ||||| || || |||||||| || ||||
gtctcataggccaacaaccactcagtatataattacaatttgattagtaatatactaatatttttt------atatctgaaaatgaaatttctaaagttttttcaaacttggttcatttgatagCAGACACCACCAACATGGAAGGTGGCAAGCTCGAATTGGTAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTCA

upper sequence: Vv07s0151g00440.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA05G22970.1 (Glycine max), 3'ss of exon 9
gtcttacta-ttattttctgcttatgtctcatcttgtaattgtattgtcatgttctctgagagaaaaggcgaaaaaaaatcccctgaaatctcttt---cctgcttcgattcttagcagACATCACCAACATGGACGGTGGCAAGCTCGAATTGGCAGAGTTGCAGGGAACAAGGACCTTTATCTTGGGACATTCA
|||| |      |    |  || | || |    ||  ||||  |||   |   |          | |   | |||  ||    || || | | ||    | || |||  ||  ||||||||| |||||||||||| ||||||||||||||||||| ||||| || || ||||| || || |||||||| || || |
gtctcataggccaacaaccactca-gtatataattacaatttaattagtaatatactaatatttatatctgcaaatgaaatttctaaagttttttcaaacttggttcatttggtagCAGACACCACCAACATGGAAGGTGGCAAGCTCGAATTGGTAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTTA

upper sequence: Vv07s0151g00440.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA01G40380.1 (Glycine max), 3'ss of exon 6
gtcttactattattttctgcttatgtctcatcttgtaattgtattgtcatgttctctgagagaaaaggcgaaaaaaaatc-ccctgaaatctctt--tcctgcttcgattcttagcagACATCACCAACATGGACGGTGGCAAGCTCGAATTGGCAGAGTTGCAGGGAACAAGGACCTTTATCTTGGGACATTCA
      |||  |||| |    ||| |      |||||||| || ||| |     | |      | ||  |||  ||  |    || || ||  ||  | ||| ||   ||  |||||| || |||||||||||| ||||||||||||||||||| || || || || ||||| || || |||||||| || || |
-----gctagcatttacacagtatat---gcattgtaatt-taatgtaacaagatttacacctagagaagaattaactttgttctaaactcagttgattctgattaacttggtagcagGCACCACCAACATGGAAGGTGGCAAGCTCGAATTGGAAGGGTAGCCGGAAACAAAGATCTATATCTTGGAACCTTTA

upper sequence: Vv07s0151g00440.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA11G04910.1 (Glycine max), 3'ss of exon 7
gtcttac----tattattttct--gcttatgtctcatcttgtaattgtattgtcatgttctctgagagaaaaggcgaaaaaaaatcc--cctgaaatctctttcctgcttcgattcttagcagACATCACCAACATGGACGGTGGCAAGCTCGAATTGGCAGAGTTGCAGGGAACAAGGACCTTTATCTTGGGACATTCA
|||| ||    ||  |||| |   |  ||||  |     | ||||| ||     || | | |   ||||| |    |            |  |     |   | ||| ||   ||  |||||| || |||||||| ||| ||||||||||||||||||| ||||| || || ||||| || || |||||||| || ||||
gtctcacaggctagcatttacacagtatatgcattgcaatttaatt-taacaatatttacaccttgagaagaatttactttgttctaaactcggttcattcattctgattaacttggtagCAGGCACCACCAACACGGAAGGTGGCAAGCTCGAATTGGAAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaaaaggcgaaaaaaaatcccctgaaatctctttcctgcttcgattcttagcagACATCACCAACATGGACGGTGGCAAGCTCGAATTGGCAGAGTTGCAGGGAACAAGGACCTTTATCTTGGGACATTCA
                            tctctttcctgcttcg  CT-rich tract
          aaaaaaaat  TA-rich tract