Sequence
atgc intronic sequence ATGC exonic sequence...ctgatgaactatgtttcttgtgctattcatatataatcaagcatttgattatgtgtatgatgtatcatatattagattaatcatgttttccttgatgcagAACTTCATGGCTGAAGCTGCCAGCTCAACACTGAATCTCGCAGGTGGAGCAATCAGCCAAGGATATAATCCATTTCCAACTCATGGCGCTGTCTCTACGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0141g00800.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA19G34470.1 (Glycine max), 3'ss of exon 6
---ctgatgaactatgtttcttgtgctattcatatataatcaagcatttgattatgtgtatgatgtatcatatattagattaatcatgttttccttgatgcagAACTTCATGGCTGAAGCTGCCAGCTCAACACTGAATCTCGCAGGTGGAGCAATCAGCCAAGGATATAATCCATTTCCAACTCATGGCGCTGTCTCTACGT
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gaaggtacagaatatggtattgaaactagcagttgttggaaaggtgcttt-ttgttggtttagtttatc-tatctgaaat-gaccacaatctatttgatgcagAATTTCATGGCTGAAGCTGCAAGTGCGACACAGGATCCTATGGGGGGATCAGTCAGCCAAGGTTACAGTGCCTATCCAACAACTGCTCCAGTTTATGCTC
upper sequence: Vv07s0141g00800.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA03G31670.2 (Glycine max), 3'ss of exon 6
---ctgatgaactatgtttcttgtgctattcatatataatcaagcatttgattatgtgtatgatgtatcatatattagattaatcatgttttccttgatgcagAACTTCATGGCTGAAGCTGCCAGCTCAACACTGAATCTCGCAGGTGGAGCAATCAGCCAAGGATATAATCCATTTCCAACTCATGGCGCTGTCTCTACGT
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gaagctacagaatatggtattgaaactagcagttgttgaaaaggtgcttt-ttgttggtttagtttgtc-tatctgaaat-gaccacaatctatttgatgcagAATTTCATGGCTGAAGCTGCAAGTGCTACACAGGATCCTATGGGGGGATCAGTCAGCCAAGGTTACAGTGCCTATCCAACAACTGCTCCAGTTTATGCTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgattatgtgtatgatgtatcatatattagattaatcatgttttccttgatgcagAACTTCATGGCTGAAGCTGCCAGCTCAACACTGAATCTCGCAGGTGGAGCAATCAGCCAAGGATATAATCCATTTCCAACTCATGGCGCTGTCTCTACGT
tgttttcctt CT-rich tract
tatcatatattagatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctgatgaactatgtttcttgtgctattcatatataatcaagcatttgattatgtgtatgatgtatcatatattagattaatcatgttttccttgatgcagAACTTCATGGCTGAAGCTGCCAGCTCAACACTGAATCTCGCAGGTGGAGCAATCAGCCAAGGATATAATCCATTTCCAACTCATGGCGCTGTCTCTACGT
ctgatga
- - - - - - - - cttgtgc
- - - - - - - - - - - - - - - - - - tcaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - gtgtatg