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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattctagaaattgattgtgacacgactctctaagttgttaaattaaacttctcttttgattatggaaactttatttgttgtgtagCATACAATAAAGCTCTGGAGGATGCTATTGCTGTGCTTGACAAAATTGCAATGTCCATAGATGTGAAGGACC

Basic information

species Vitis vinifera
transcript Vv07s0130g00410.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0130g00410.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os06g34690.1 (Oryza sativa), 3'ss of exon 6
gtatt--ctagaaattgattgtgacacgactctctaagttgttaaattaaacttctcttttgattatggaaactttatttgttgtgtagCATACAATAAAGCTCTGGAGGATGCTATTGCTGTGCTTGACAAAATTGCAATGTCCATAGATGTGAAGGACC
|||||   |    ||||  |  ||      | | |   ||||| | ||     ||| || |||  |     | | | | |  | |  ||||||||  |||||||| ||||||||| | ||||| ||||||||||||||||||    | || ||||| ||||
gtattgcttgatcattgtatcagatggtgttatttcctttgttgattttttagtctgttctgaa-acatttagtgtctctcattttcagCATACACCAAAGCTCTTGAGGATGCTTTAGCTGTCCTTGACAAAATTGCAATGCATGTTGACGTGAATGACC

upper sequence: Vv07s0130g00410.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G175510_T01 (Zea mays), 3'ss of exon 6
-----------gtattctagaaattg-attgtgacacgactct-ctaagttgttaaattaaacttctcttttgattatggaaactttatttgttgtgtagCATACAATAAAGCTCTGGAGGATGCTATTGCTGTGCTTGACAAAATTGCAATGTCCATAGATGTGAAGGACC
            ||||||    | || | | |   | |    | ||    | |||   |  |  |||  | |  |       |  || | |  | |  ||||||||  ||||| || || |||||||||||||| |||||||||||||||||| |  | |||||||| || |
gtaagattcctttattctcagtactgcagtttactagggtaatacttgacttttattcttgatctcttgtcttctggaacttatattttctcatcttcagCATACACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAATGCCGGTTGATGTGAATGATC

upper sequence: Vv07s0130g00410.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G069765_T03 (Zea mays), 3'ss of exon 6
---gtattctagaaattgattgtgacacgactctctaagttgttaaattaaacttctcttttgattatggaaactt-tatttgttgtgt----agCATACAATAAAGCTCTGGAGGATGCTATTGCTGTGCTTGACAAAATTGCAATGTCCATAGATGTGAAGGACC----------------------------
     ||||    | ||    ||    |   |  ||| | |  ||  |     || | | || | |   ||||||| ||||| |  | |    |||||| |  ||||| || || |||||||||||||| |||||||||||||||||| |  | |||||||| || |                            
gtaagattccttta-ttctcagtactgcactttactagggtaatacctgttttttatatcttaacttctgaaacttgtatttttcttatcttcagCATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAATGGCTGTTGATGTGAATGATCGTAAGTTTACAGTGAACATATATTTTGT

upper sequence: Vv07s0130g00410.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G069765_T05 (Zea mays), 3'ss of exon 6
---gtattctagaaattgattgtgacacgactctctaagttgttaaattaaacttctcttttgattatggaaactt-tatttgttgtgt----agCATACAATAAAGCTCTGGAGGATGCTATTGCTGTGCTTGACAAAATTGCAATGTCCATAGATGTGAAGGACC
     ||||    | ||    ||    |   |  ||| | |  ||  |     || | | || | |   ||||||| ||||| |  | |    |||||| |  ||||| || || |||||||||||||| |||||||||||||||||| |  | |||||||| || |
gtaagattccttta-ttctcagtactgcactttactagggtaatacctgttttttatatcttaacttctgaaacttgtatttttcttatcttcagCATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAATGGCTGTTGATGTGAATGATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagttgttaaattaaacttctcttttgattatggaaactttatttgttgtgtagCATACAATAAAGCTCTGGAGGATGCTATTGCTGTGCTTGACAAAATTGCAATGTCCATAGATGTGAAGGACC
                       ttttgat  putative branch site (score: 4)
                                      ctttattt  putative PPT
     tgttaaattaaactt  TA-rich tract