Sequence
atgc intronic sequence ATGC exonic sequence...aaactcttctgagatgtcctttcttaattcaagatatctcagtttgtaaccctgttgaggacatctaacttatgaaaaggatcatggcttaattctgcagGTTTTCAATGAGATAAGCTCCCGAGAAATGGAGAAAATCAATGTATTCAAAGGCATACTGGATAACTATGTATTTGCTGCTGTTCTCACTTCCACCGTCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0129g00180.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA11G05190.1 (Glycine max), 3'ss of exon 6
-aaactcttctgagatgtc--ctttcttaattcaagatatct-cagtttgtaaccctgttgaggac-atctaacttatgaaaaggatcatggcttaattct--gcagGTTTTCAATGAGATAAGCTCCCGAGAAATGGAGAAAATCAATGTATTCAAAGGCATACTGGATAACTATGTATTTGCTGCTGTTCTCACTTCCACCGTCC
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gtaacttttcttaaaagcagacaaacttgtttaggaatatttattactcaaaaaattattaaattcgaagtgtcttaccagatgtgggttgatttggttttgtgcagGTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAAGGCATATTGGATAACTATGTTTTCGTGGGTGTCATCAGTGCTACTGTTT
upper sequence: Vv07s0129g00180.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA01G40130.1 (Glycine max), 3'ss of exon 6
----------------------aaactcttctgagatgtcctttcttaa-ttcaagatatctcagtttgtaaccctgttgaggacatctaacttatgaaaaggatcatggcttaattctgcagGTTTTCAATGAGATAAGCTCCCGAGAAATGGAGAAAATCAATGTATTCAAAGGCATACTGGATAACTATGTATTTGCTGCTGTTCTCACTTCCACCGTCC
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gtaacttttcttaaaagctgacaatttttttaggaatatttattattaaattcatagt------gtatgtatgctatttgtatagaagtatcttacaagatgtgggttgatttggttttgcagGTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAAGGAATATTGGATAACTATGTTTTCGTGGGTGTCATCAGTGCTACTGTTT
upper sequence: Vv07s0129g00180.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT2G22950.1 (Arabidopsis thaliana), 3'ss of exon 6
--------aaactcttctgagatgtcctttcttaattcaagat-----atctcagtttgtaaccctgttgaggacatctaacttatgaaaaggatcatggcttaattctgcagGTTTTCAATGAGATAAGCTCCCGAGAAATGGAGAAAATCAATGTATTCAAAGGCATACTGGATAACTATGTATTTGCTGCTGTTCTCACTTCCACCGTCC
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gtaatttataacaatcataagttatactcaaaacacttaaaagtgttaacctacacttgtagattttatg-gtatgactaacttttgggtggtttgtt--cttaatgtttcagGTTTTCAATGAAGTAAGCTCGCGGGAGATGGAAGAGATCGATGTTTTCAAAGGCATACTCGACAACTATGTTTTCGTGGTTGTTATTGGTGCAACAGTTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtaaccctgttgaggacatctaacttatgaaaaggatcatggcttaattctgcagGTTTTCAATGAGATAAGCTCCCGAGAAATGGAGAAAATCAATGTATTCAAAGGCATACTGGATAACTATGTATTTGCTGCTGTTCTCACTTCCACCGTCC
ttatgaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaactcttctgagatgtcctttcttaattcaagatatctcagtttgtaaccctgttgaggacatctaacttatgaaaaggatcatggcttaattctgcagGTTTTCAATGAGATAAGCTCCCGAGAAATGGAGAAAATCAATGTATTCAAAGGCATACTGGATAACTATGTATTTGCTGCTGTTCTCACTTCCACCGTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - -cttctga
- - - - - - - - tcctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatggc