Sequence
atgc intronic sequence ATGC exonic sequence...accgtctgtatagttctacacacactttccctgggaattatttttgctttatagaaaaactaattttcttgatagatacttaatgctatctttgttgcagGAAATAATGCAACATAAGCTTGTCTTTATTGAGACTCAGGATGTGGTGGAAACTACATTAGCTCTAGACAATTATCGCAGAGCTTGTGACTGTGGGAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0104g00060.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA16G28290.1 (Glycine max), 3'ss of exon 6
accgtctgtatagttctacacacactttccctgggaattatttttgctttatagaaaaactaattttcttgatagatacttaatgc-tatctttgttgcagGAAATAATGCAACATAAGCTTGTCTTTATTGAGACTCAGGATGTGGTGGAAACTACATTAGCTCTAGACAATTATCGCAGAGCTTGTGACTGTGGGAGAG
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gttagttagattctttgatatccagtccacgggtagagtagtagtatttgttatatag------tttggtggtg--tgctaaaagcatcttttttttccagGAAATAATGCAACATAAACTTGTCTTTATTGAGACTCAGGATGTGGTAGAGACTACATTGGCTCTTGATAACTATCGCAAGGCTTGTGATTGTGGAAGAG
upper sequence: Vv07s0104g00060.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA02G09080.1 (Glycine max), 3'ss of exon 6
--------accgtctgtatagttctacacaca---ctttccctggg-aattatttttgctttatagaaaaactaattttcttgatagatacttaatgctatctttgttgcagGAAATAATGCAACATAAGCTTGTCTTTATTGAGACTCAGGATGTGGTGGAAACTACATTAGCTCTAGACAATTATCGCAGAGCTTGTGACTGTGGGAGAG
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gtgaggggactagttagattcttcaatatccagtccatttactggttgagtagtagtatctgttatatagtttggtggtgt-gctaaaagcatctttgttttttt-ttccagGAAATAATGCAACATAAACTTGTCTTTATTGAGACTCAGGATGTGGTAGAGACTACATTGGCTCTTGATAACTACCGCAAGGCTTGTGATTGTGGAAGAG
upper sequence: Vv07s0104g00060.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT1G03190.2 (Arabidopsis thaliana), 3'ss of exon 6
---------------------------------accgtctgtatagttctacacacac-----tttccctgg------gaattatttttgctttatagaaaaactaat-----tttcttgatagatact--taatgctatctttgtt-gcagGAAATAATGCAACATAAGCTTGTCTTTATTGAGACTCAGGATGTGGTGGAAACTACATTAGCTCTAGACAATTATCGCAGAGCTTGTGACTGTGGGAGAG
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gtaaggtcttcttcatcgctttaccatgccagtaattttttcagagttttgcatgaattggaatttttatgatacctcaaaatatttttagttgcttcaggcattaatgtatatttgtttactgatattaccaattctcttaatgtttgtagGAAATAATGCAACAGAAGCTTGTTTTCATTGAAACACAAGATGTTGTAGAAACAACATTGGCACTGGATAATTATCGCAGGGCTTGCGATTGCGGAAGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gctttatagaaaaactaattttcttgatagatacttaatgctatctttgttgcagGAAATAATGCAACATAAGCTTGTCTTTATTGAGACTCAGGATGTGGTGGAAACTACATTAGCTCTAGACAATTATCGCAGAGCTTGTGACTGTGGGAGAG
ctatcttt CT-rich tract
atagaaaaactaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
accgtctgtatagttctacacacactttccctgggaattatttttgctttatagaaaaactaattttcttgatagatacttaatgctatctttgttgcagGAAATAATGCAACATAAGCTTGTCTTTATTGAGACTCAGGATGTGGTGGAAACTACATTAGCTCTAGACAATTATCGCAGAGCTTGTGACTGTGGGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - -acacaca
- - - - - - - - - - - - ctttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - agaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctatc