Sequence
atgc intronic sequence ATGC exonic sequence...ggaattactaatttagcatatacttagttaatgacttcgtggttttgaaatctaagcatatgagttagttattttgactttcatagtatttttttaatagGGAGCGAAGGATGAGTTCACCCTTGATCTTGTAGAGCAGTGTTCATTTCAAAAGCAACGAGTAATGCATCTTGTGATGACTTCTCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g03190.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G00750.1 (Glycine max), 3'ss of exon 7
----ggaattactaatttagcatatacttagttaatgacttcgtggttttgaaatctaagcatatgagttagttattttgactttcatagtatttttttaatagGGAGCGAAGGATGAGTTCACCCTTGATCTTGTAGAGCAGTGTTCATTTCAAAAGCAACGAGTAATGCATCTTGTGATGACTTCTCG
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tttatatactttttattt--tatgaaccaaacctgaga-tacacgtatgtaaaatgtaaata-atcacattccagctttagctaaaactgtattttttttctagGCTGCAAGAGATGAATTCACCCTTGACCTTGTTGAACAATGTTCATTTCAGAAGCAAAGGGTAATGCATCTTGTGATGGCTTCTCG
upper sequence: Vv07s0031g03190.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA06G16740.1 (Glycine max), 3'ss of exon 8
ggaattactaatttagcatatacttagttaatgacttcgtggttttgaaatctaagcata-tgagttagttattttgactttcatagta-tttttttaatagGGAGCGAAGGATGAGTTCACCCTTGATCTTGTAGAGCAGTGTTCATTTCAAAAGCAACGAGTAATGCATCTTGTGATGACTTCTCG
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-----------------------gtaagtgccgagagt-tagttatagaatctgtaaataattactttctaacttttgctttataaatgctttcctttttagGGAGCAAGGGATGAATTCACCCTTGACCTTGTAGAACAATGTTCTTTTCAAAAACAAAGGGTTATGCATCTTGTGATGGCTTCCCG
upper sequence: Vv07s0031g03190.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA05G33150.1 (Glycine max), 3'ss of exon 10
ggaattactaatttagcatatacttagtta-atgacttcgtggttttgaaatctaagcatatgagttagttattttgactttcatagtatttttttaatagGGAGCGAAGGATGAGTTCACCCTTGATCTTGTAGAGCAGTGTTCATTTCAAAAGCAACGAGTAATGCATCTTGTGATGACTTCTCG
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-tttttattttatgaaccaaacctgagatacacgtatgtaaaatgtaaataatcacattcctgcattagctaaaacttatttttttttttttcttttctagGCTGCAAGAGATGAATTCACCCTTGACCTTGTTGAACAATCTTCATTTCAGAAGCAAAGGGTAATGCATCTTGTGATGGCTTCTCG
upper sequence: Vv07s0031g03190.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA04G38320.2 (Glycine max), 3'ss of exon 8
ggaattactaatttagcatatacttagttaatgacttcg--tggttttgaaatctaagcata-tgagttagttattttgactttcatagtatttttttaatagGGAGCGAAGGATGAGTTCACCCTTGATCTTGTAGAGCAGTGTTCATTTCAAAAGCAACGAGTAATGCATCTTGTGATGACTTCTCG
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--------------------------gtgagtgccgagagttagttatagaatctgtaaatagttacattctaacttttgctttataaatggtttattttcagGGAGCAAGTGATGAATTCACCCTTGACCTTGTAGAACAATGTTCTTTTCAAAAACAAAGGGTTATGCATCTTGTAATGGCTTCTCG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgaaatctaagcatatgagttagttattttgactttcatagtatttttttaatagGGAGCGAAGGATGAGTTCACCCTTGATCTTGTAGAGCAGTGTTCATTTCAAAAGCAACGAGTAATGCATCTTGTGATGACTTCTCG
ttttgac putative branch site (score: 3)
tattttttt putative PPT
ttagttattttgactt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggaattactaatttagcatatacttagttaatgacttcgtggttttgaaatctaagcatatgagttagttattttgactttcatagtatttttttaatagGGAGCGAAGGATGAGTTCACCCTTGATCTTGTAGAGCAGTGTTCATTTCAAAAGCAACGAGTAATGCATCTTGTGATGACTTCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatatg