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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttatgacaacagaagaacttccattctttgtaacattcctgcttaatagtgaacactctaatatcagGTAACGACATCCATCTACAACCTGATTTTAGGGAAACTCTACTGTGAACATTATGGCACAATGCATATACGAGGAAATCGTGACTACTCTTGTAAGATAA

Basic information

species Vitis vinifera
transcript Vv07s0031g02980.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g02980.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA06G16720.1 (Glycine max), 3'ss of exon 7
------------------------------------------------------gtatgtttatgacaacagaagaacttccattct-ttgtaacattcctgcttaatagtgaac----actctaatatcagGTAACGACATCCATCTACAACCTGATTTTAGGGAAACTCTACTGTGAACATTATGGCACAATGCATATACGAGGAAATCGTGACTACTCTTGTAAGATAA
                                                        || || ||           || || || ||| || | | || |   || | |||| |||    | ||||  |||||||||| |||||||| |||||||| |||||||| |||||||||||||| |||||||| ||||||| | ||   || || ||||| || || |||||||| |
gtatatatagttttactttatgttagcagtatactcgtatatatcaatctctttcaatattaatccatttgatctaattttcaatctcttcttatatacactctgattagttaactcatattctatcatcagGTAACAACATCCATTTACAACCTCATTTTAGGAAAACTCTACTGTGACCATTATGGTACAATGCGTGTAGAGGGGAACCGTGAGTATTCATGTAAGATCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagaacttccattctttgtaacattcctgcttaatagtgaacactctaatatcagGTAACGACATCCATCTACAACCTGATTTTAGGGAAACTCTACTGTGAACATTATGGCACAATGCATATACGAGGAAATCGTGACTACTCTTGTAAGATAA
                              ttaatagt  TA-rich tract