Sequence
atgc intronic sequence ATGC exonic sequence...ggacaggatttgttgattgcctttagtatctcatgcttttagtaatcatgcttatctgtgatatattccacttgataattaaactatccatctctttcagGGATGCTTCTTTCGACAATTTTTCAGGTCTGTTAGTAGGTCTGACTACTTGACATTGCGCAATGGGTTCATCACT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA16G21510.1 (Glycine max), 3'ss of exon 6
ggacaggatttgttgattgcctttagtatctcatgcttttagtaatcatgcttatctgtgatatattccacttgataattaaactat-ccatctctttcagGGATGCTTCTTTCGACAATTTTTCAGGTCTGTTAGTAGGTCTGACTACTTGACATTGCGCAATGGGTTCATCACT
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ttttaaatatcattagtagcctgctgttttata-acttgaatttatcatgctttttttaaattgacctcttgtaccacgtcttccatgttgctactttcagGGATGCTTCTTTAGACAATTTTATAGGTCTGTGGGCAAGGCTGACTACTTGGCTTTGCGCAATGGATTTATCACG
upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA09G32920.1 (Glycine max), 3'ss of exon 2
ggacaggatttgttgattgcctttagt--atctcatgcttttagta-atcatgcttatctgtgatatattccacttgataattaaactat-ccatctctttcagGGATGCTTCTTTCGACAATTTTTCAGGTCTGTTAGTAGGTCTGACTACTTGACATTGCGCAATGGGTTCATCACT
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----attagtaataaaatgccttttatttactacttgaattaagtttatcatgctctttttaaattaacctcttgtaccatgtcttcaatgttgccaatttcagGGATGCTTCTTTAGACAATTTTATAGGTCTGTAGGCAAGGCTGACTACTTGGCTTTGCGCAATGGATTTATCACG
upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA11G09270.1 (Glycine max), 3'ss of exon 6
ggacaggatttgttgattgc--ctttagtatctcatgcttt-tagtaatcatgcttatctgtgatatattccacttgataattaaactatccatctctttcagGGATGCTTCTTTCGACAATTTTTCAGGTCTGTTAGTAGGTCTGACTACTTGACATTGCGCAATGGGTTCATCACT
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-agcaaattttttatgtcaaaactcaaatgttccataccttctatttctcatgcttatttttaaaagtgatgatgtaacaactt--ttttttttcaatttcagCGCTGCTTCTTTAGGCAGTTTTATAGGTCTGTAAATAAGACTGACTACTTGACTTTGCGCAATGGGTTTATCACTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122688552|gb|EC920354.1|EC920354EST: TGAGAGCACACACCAGTTTCTGGACCAGGATTCCATTCTTCTTTTATGTT GGATGCTTCTTTCGACAATTTTTCAGGTCTGTTAGTAGGTCTGACTACTTG
genomic: TGAGAGCACACACCAGTTTCTGGACCAGGATTCCATTCTTCTTTTATGTTgtaagaaata ... tctctttcagGGATGCTTCTTTCGACAATTTTTCAGGTCTGTTAGTAGGTCTGACTACTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcatgcttatctgtgatatattccacttgataattaaactatccatctctttcagGGATGCTTCTTTCGACAATTTTTCAGGTCTGTTAGTAGGTCTGACTACTTGACATTGCGCAATGGGTTCATCACT
acttgat putative branch site (score: 5)
ctatccatctctttc putative PPT
ttgataattaaactat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggacaggatttgttgattgcctttagtatctcatgcttttagtaatcatgcttatctgtgatatattccacttgataattaaactatccatctctttcagGGATGCTTCTTTCGACAATTTTTCAGGTCTGTTAGTAGGTCTGACTACTTGACATTGCGCAATGGGTTCATCACT
- - - - - - - gattgcc
- - - - - - - - - - - - - - -ctcatgc
- - - - - - - - - - - - - - - tcatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aattaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctatcca