Sequence
atgc intronic sequence ATGC exonic sequence...ggcttctaaaaggctaaaggctgactgttttatttgtacatgactctaatgaaagtgattggggatagaatttgacttttttcttgttgcctttttgaagTTCATGCACGAAGATTGCAAGCTTTGAAGGCTCTGACATATGCTCCATCAAGCAACTCAGAAATTTTGTCTACATTGTATGATATTGTATTTGGCATTCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA05G36530.1 (Glycine max), 3'ss of exon 5
--ggcttctaaaaggctaaaggctgactgtt-ttatttgtacatgactctaatgaaagtgattggggatagaatttgacttttttcttgttgcctttttgaagTTCATGCACGAAGATTGCAAGCTTTGAAGGCTCTGACATATGCTCCATCAAGCAACTCAGAAATTTTGTCTACATTGTATGATATTGTATTTGGCATTCT
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gtcatctctttaaaacaatgcatgggttttagttgttgaagtatgccttcatttt---ttattgagattatgtcttgattcctattcaacttatgttttgaagTTCATGCTCGAAGATTGCAATCCTTGAAGGCACTTACATATGCTCCTTCATCCAACTCTGATGTTTTGTCCAGATTGTATGAAATTGTATTTGGTATACT
upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G03020.1 (Glycine max), 3'ss of exon 5
ggcttctaaaaggctaaaggctgactgtt-ttatttgtacatgactctaatgaaagtgattggggatagaatttgacttttttcttgttgcctttttgaagTTCATGCACGAAGATTGCAAGCTTTGAAGGCTCTGACATATGCTCCATCAAGCAACTCAGAAATTTTGTCTACATTGTATGATATTGTATTTGGCATTCT
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tatctcattaaaacaatgcacaagttttagttattgaagtatgtcttcatttttcat-atcaagattatgtcttgattcctattcaacttatgttttgaagTTCATGCTCGGAGATTGCAATCCTTGAAGGCACTTACATATGCTCCTTCATCCAACTCTGATGTTTTGTCCAGATTGTTTGAAATTGTATTTGGCATACT
upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT2G07360.1 (Arabidopsis thaliana), 3'ss of exon 5
ggcttctaaaaggctaaaggctgactgttttatttgtacatgactctaatg--aaagtgattggggatagaatttgacttttttcttgttgcctttttgaagTTCATGCACGAAGATTGCAAGCTTTGAAGGCTCTGACATATGCTCCATCAAGCAACTCAGAAATTTTGTCTACATTGTATGATATTGTATTTGGCATTCT
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-gttatggaagtgagaaccaacatctaagatagatttccaactttccatctgtaatgtgactggagatgaatttctaaccttatcatat-gtttttcttcagTTCATGCTCGACGACTGCAAGCTTTGAAAGCTCTGACATATTCACCATCAGGCAATTCTGAGCTTTTGTCAAAATTGTATGAGATTGTATTTGGCATTCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctaatgaaagtgattggggatagaatttgacttttttcttgttgcctttttgaagTTCATGCACGAAGATTGCAAGCTTTGAAGGCTCTGACATATGCTCCATCAAGCAACTCAGAAATTTTGTCTACATTGTATGATATTGTATTTGGCATTCT
cttttttcttgttgcc CT-rich tract
aatttgactttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggcttctaaaaggctaaaggctgactgttttatttgtacatgactctaatgaaagtgattggggatagaatttgacttttttcttgttgcctttttgaagTTCATGCACGAAGATTGCAAGCTTTGAAGGCTCTGACATATGCTCCATCAAGCAACTCAGAAATTTTGTCTACATTGTATGATATTGTATTTGGCATTCT
- - - -aaaaggc
- - - - - - - - - - -tgactgt
- - - - - - - - - - - - - - - - - - -acatgac
- - - - - - - - - - - - - - - - - - - - - - - -aatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgattgg