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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacattctgtttttgctcctcaccctctattcctttcttgttacaaaaccacattgcaggcttgtgtcatcatttccttaacatctttttggcaataattcagAGATCATTGTCTCTGGAGGGATGACAATGCCGCAGACTATTGCTCCTCTTGCTCGACCAAATGATAGAATCCCTCTCAACAGAATAATGTAACTGCGGGG

Basic information

species Vitis vinifera
transcript Vv07s0031g02010.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22014341|gb|BQ799375.1|BQ799375
EST:     CAACTCCAAGGAGATCATTAGACCAAATCTGTCCATTCGAGAAGGCATAG                         AGATCATTGTCTCTGGAGGGATGACAATGCCGCAGACTATTGCTCCTCTTG
genomic: CAACTCCAAGGAGATCATTAGACCAAATCTGTCTATTCGAGAAGGCATAGgtacattctg ... aataattcagAGATCATTGTCTCTGGAGGGATGACAATGCCGCAGACTATTGCTCCTCTTG
EST: gi|110700237|gb|EE078049.1|EE078049
EST:     CAACTCCAAG-AGATCATTAGAC-AGATCTGTCTATTCGAGAAAGCATAT                         AGATCATTGTCTCTGGAGGG
genomic: CAACTCCAAGGAGATCATTAGACCAAATCTGTCTATTCGAGAAGGCATAGgtacattctg ... aataattcagAGATCATTGTCTCTGGAGGG
EST: gi|110365975|gb|EC929565.1|EC929565
EST:     CAACTCCAAGGAGATCATTAGACCAAATCTGTCCATTCGAGAAGGCATAG                         AGATCATTGTCTCTGGAGGGATGACAATGCCGCAGACTATTGCTCCTCTTG
genomic: CAACTCCAAGGAGATCATTAGACCAAATCTGTCTATTCGAGAAGGCATAGgtacattctg ... aataattcagAGATCATTGTCTCTGGAGGGATGACAATGCCGCAGACTATTGCTCCTCTTG
EST: gi|110425265|gb|EC991647.1|EC991647
EST:     CAACTCCAAGGAGATCATTAGACCAAATCTGTCTATTCGAGAAGGCATAG                         AGATCATTGTCTCTGGAGGGATGACAATGCCGCAGACTATTGCTCCTCTTG
genomic: CAACTCCAAGGAGATCATTAGACCAAATCTGTCTATTCGAGAAGGCATAGgtacattctg ... aataattcagAGATCATTGTCTCTGGAGGGATGACAATGCCGCAGACTATTGCTCCTCTTG
EST: gi|110398629|gb|EC965098.1|EC965098
EST:     CAACTCCAAGGAGATCATTAGACCAAATCTGTCTATTCGAGAAGGCATAG                         AGATCATTGTCTCTGGAGGGATGACAATGCCGCAGACTATTGCTCCTCTTG
genomic: CAACTCCAAGGAGATCATTAGACCAAATCTGTCTATTCGAGAAGGCATAGgtacattctg ... aataattcagAGATCATTGTCTCTGGAGGGATGACAATGCCGCAGACTATTGCTCCTCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccacattgcaggcttgtgtcatcatttccttaacatctttttggcaataattcagAGATCATTGTCTCTGGAGGGATGACAATGCCGCAGACTATTGCTCCTCTTGCTCGACCAAATGATAGAATCCCTCTCAACAGAATAATGTAACTGCGGGG
                           ccttaac  putative branch site (score: 3)
                                             aataattca  TA-rich tract