1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctttgcatctaagatttgttgcataatggcctatattgagtccttgtttatatttttgttataccaaatagatgtcatttggtttttcctacttgtgtagGTATCACTCCCACAGCAATGATTACCTTGAAATTTGTCGTAGCTATAAGGCGATATATGAAATCCCATCTGTCAGAGAAGATCCAGCTCAGTGGATACCG
species | Vitis vinifera |
transcript | Vv07s0031g01970.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATTCCTTCTTTGCCAGAGTTGAAGCGCATCTACTATGAACTGATGATTAG GTGTCACTCCCACAGCAATGATTACCTTGAAATTTGTCGTAGCTATAAGGCEST: gi|110391070|gb|EC956024.1|EC956024
genomic: ATTCCTTCTTTGCCAGAGTTGAAGCGCATCTACTATGAACTGATGATTAGgtattttggg ... acttgtgtagGTATCACTCCCACAGCAATGATTACCTTGAAATTTGTCGTAGCTATAAGGC
EST: ATTCCTTCTTTGCCAGAGTTGAAGCGCATCTACTATGAACTGATGATTAG GTATCACTCCCACAGCAATGATTACCTTGAAATTTGTCGTAGCTATAAGGCEST: gi|110381624|gb|EC934958.1|EC934958
genomic: ATTCCTTCTTTGCCAGAGTTGAAGCGCATCTACTATGAACTGATGATTAGgtattttggg ... acttgtgtagGTATCACTCCCACAGCAATGATTACCTTGAAATTTGTCGTAGCTATAAGGC
EST: ATTCCTTCTTTGCCAGAGTTGAAGCGCATCTACTATGAACTGATGATTAG GTATCACTCCCACAGCAATGATTACCTTGAAATTTGTCGTAGCTATAAGGCEST: gi|27583566|gb|CB006261.1|CB006261
genomic: ATTCCTTCTTTGCCAGAGTTGAAGCGCATCTACTATGAACTGATGATTAGgtattttggg ... acttgtgtagGTATCACTCCCACAGCAATGATTACCTTGAAATTTGTCGTAGCTATAAGGC
EST: ATTCCTTCTTTGCCAGAGTTGAAGCGCATCTACTATGAACTGATGATTAG GTATCACTCCCACAGCAATGATTACCTTGAAATTTGTCGTAGCTATAAGGCEST: gi|349825795|gb|FQ423090.1|FQ423090
genomic: ATTCCTTCTTTGCCAGAGTTGAAGCGCATCTACTATGAACTGATGATTAGgtattttggg ... acttgtgtagGTATCACTCCCACAGCAATGATTACCTTGAAATTTGTCGTAGCTATAAGGC
EST: ATTCCTTCTTTGCCAGAGTTGAAGCGCATCTACTATGAACTGATGATTAG GTATCACTCCCACAGCAATGATTACCTTGAAATTTGTCGTAGCTATAAGGC
genomic: ATTCCTTCTTTGCCAGAGTTGAAGCGCATCTACTATGAACTGATGATTAGgtattttggg ... acttgtgtagGTATCACTCCCACAGCAATGATTACCTTGAAATTTGTCGTAGCTATAAGGC
gtttatatttttgttataccaaatagatgtcatttggtttttcctacttgtgtagGTATCACTCCCACAGCAATGATTACCTTGAAATTTGTCGTAGCTATAAGGCGATATATGAAATCCCATCTGTCAGAGAAGATCCAGCTCAGTGGATACCG
tttttcctacttgt CT-rich tract
tatttttgttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttgcatctaagatttgttgcataatggcctatattgagtccttgtttatatttttgttataccaaatagatgtcatttggtttttcctacttgtgtagGTATCACTCCCACAGCAATGATTACCTTGAAATTTGTCGTAGCTATAAGGCGATATATGAAATCCCATCTGTCAGAGAAGATCCAGCTCAGTGGATACCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - gcatcta
- - - - - - - - tgttgca
- - - - - - - - - - - - aatggcc
- - - - - - - - - - - - - - - - - - - -gtccttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataccaa