1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aatcattattttaaagattttattttattttatttagtttcattgtcatcttttaatgtttgcattcaacattctgataaaagtcatctccgggtctcagTTGCGTATCTGCTTGGCCTTCCTATCCTGGGCTATTCACTGGATATTGGAAAAGAGCATGTGAATCTCATAGACGAAAGGCTGGAAAAACTGATATACAG
species | Vitis vinifera |
transcript | Vv07s0031g01560.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCCTGATTATCAGGAGAGGATTGCTAGACATGAAGCAGCCCATTTTTTAG TTGCGTATCTGCTTGGCCTTCCTATCCTGGGCTATTCACTGGATATTGGAA
genomic: TCCTGATTATCAGGAGAGGATTGCTAGACATGAAGCAGCCCATTTTTTAGgtaacctctc ... cgggtctcagTTGCGTATCTGCTTGGCCTTCCTATCCTGGGCTATTCACTGGATATTGGAA
tcatcttttaatgtttgcattcaacattctgataaaagtcatctccgggtctcagTTGCGTATCTGCTTGGCCTTCCTATCCTGGGCTATTCACTGGATATTGGAAAAGAGCATGTGAATCTCATAGACGAAAGGCTGGAAAAACTGATATACAG
ttctgat putative branch site (score: 3)
tcatctcc putative PPT
ttttaatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatcattattttaaagattttattttattttatttagtttcattgtcatcttttaatgtttgcattcaacattctgataaaagtcatctccgggtctcagTTGCGTATCTGCTTGGCCTTCCTATCCTGGGCTATTCACTGGATATTGGAAAAGAGCATGTGAATCTCATAGACGAAAGGCTGGAAAAACTGATATACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatctc