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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattgatattcttatgcttgataattgatttttttttttttttttgacaagttcattaggttatttgctttgaacatgatctgtaaaccatggcaagaaattaccatagtgctatgtgattgtttcttgcagTTATTTTGAGACATATGGTGAAATAACGGATTTGTACATGCCAAAG

Basic information

species Vitis vinifera
transcript Vv07s0031g00600.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g00600.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA01G39330.1 (Glycine max), 3'ss of exon 6
--------gtaattgatattcttatgcttgataattgatttttttttttttttttgacaagttcattagg--ttatttgctttgaacatgatctgtaaaccatggcaagaaattaccatagtgctatgtgattgtt--tcttgcagTTATTTTGAGACATATGGTGAAATAACGGATTTGTACATGCCAAAG
        |||  |  |||  | ||     |||||  |   |    |||| ||||      || | ||    ||  ||   |||||  |   |  | ||   ||  | |  | |  ||||    ||| |  || ||  ||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||
gtatacgagtatgtagtatcttcat-tacaataatccacactgaggttttcttttttttcctttagtaatattttcttatattgaatgtatacgatgaagtttg-tatggtagtctcataaccttatatttttctttttcttgcagTCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG

upper sequence: Vv07s0031g00600.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA11G05940.1 (Glycine max), 3'ss of exon 6
--------gtaattgatattcttatgcttgataattgatttt---tttttttttttttgacaag--ttcattaggttatttgctttgaacatgatctgtaaaccatggcaagaaattaccatagtgctatgtgattgtttcttgcagTTATTTTGAGACATATGGTGAAATAACGGATTTGTACATGCCAAAG
        |||  |  |||  | ||     |||||  |   |    |||||||  |||   ||   ||  ||| |||   ||  |   |     | ||||    |     | ||  |  | || |  |   |   | ||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||
gtatacgagtatgtagtatcttcat-tacaataatccacactagtgtttttttcctttagtaatattttcttatgttgaatgtatacgatgaagtttgtatgatagtctcacaacctttctta-tatttcttttctttttcttgcagTCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110415764|gb|EC981696.1|EC981696
EST:     ATATTCGTGGCTAGGATCCCGGACTCTGTGAATGAGGCTGCCTTCCGAAG                         TTATTTTGAGACATATGGTGAAATAACGGATTTGTACATGCCAAAG
genomic: ATATTTGTGGCTAGGATCCCGGACTCTGTGAATGAGGCTGCCTTCCGAAGgtaattgata ... tttcttgcagTTATTTTGAGACATATGGTGAAATAACGGATTTGTACATGCCAAAG
EST: gi|110429617|gb|EC996114.1|EC996114
EST:     ATATTCGTGGCTAGGATCCCGGACTCTGTGAATGAGGCTGCCTTCCGAAG                         TTATTTTGAGACATATGGTGAAATAACGGATTTGTACATGCCAAAG
genomic: ATATTTGTGGCTAGGATCCCGGACTCTGTGAATGAGGCTGCCTTCCGAAGgtaattgata ... tttcttgcagTTATTTTGAGACATATGGTGAAATAACGGATTTGTACATGCCAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatctgtaaaccatggcaagaaattaccatagtgctatgtgattgtttcttgcagTTATTTTGAGACATATGGTGAAATAACGGATTTGTACATGCCAAAG
                                          ttgtttctt  CT-rich tract
                 aagaaatta  TA-rich tract