Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttctgttgctaaagaatactagaattttccccacattacccctctttaatgctatcgttctctgtttcattaactcgtgatgctatggttttatattagGATCGTAGAGCAGGGAGAGATTCAGTACGTGCACATCGTGACAGCCCAAGGAATGGATTGATGGAGAAGCGAGTCACAGAATCAGGGGATAGTAGTGGGT

Basic information

species Vitis vinifera
transcript Vv07s0031g00480.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110716800|gb|EE092098.1|EE092098
EST:     TGGGTCATGTTATACATATGCTTGAAGCTGAAGAATCCCCCTTCAGAGAT                         GATCGTAGAGCAGGGAGAGATTCAGTACGTGCACATCGTGACAGCCCAAGG
genomic: TGGGTCATGTTATACATATGCTTGAAGCTGAAGAATCCCCCTTCAGAGATgtatgcatcc ... tttatattagGATCGTAGAGCAGGGAGAGATTCAGTACGTGCACATCGTGACAGCCCAAGG
EST: gi|110695265|gb|EE073082.1|EE073082
EST:     TGGGGCATGTTATACATATGCTTGAAGCTGAAGAATCCCCCTTCAGAGAT                         GATCGTAGAGCAGGGAGAGATTCAGTACGTGCACATCGTGACAGCCCAAGG
genomic: TGGGTCATGTTATACATATGCTTGAAGCTGAAGAATCCCCCTTCAGAGATgtatgcatcc ... tttatattagGATCGTAGAGCAGGGAGAGATTCAGTACGTGCACATCGTGACAGCCCAAGG
EST: gi|110420367|gb|EC986639.1|EC986639
EST:     TGGGTCATGTTATACATATGCTTGAAGCTGAAGAATCCCCCTTCAGAGAT                         GATCGTAGAGCAGGGAGAGATTCAGTACGTGCACATCGTGACAGCCCAAGG
genomic: TGGGTCATGTTATACATATGCTTGAAGCTGAAGAATCCCCCTTCAGAGATgtatgcatcc ... tttatattagGATCGTAGAGCAGGGAGAGATTCAGTACGTGCACATCGTGACAGCCCAAGG
EST: gi|110429562|gb|EC996058.1|EC996058
EST:     TGGGTCATGTTATACATATGCTTGAAGCTGAAGAATCCCCCTTCAGAGAT                         GATCGTAGAGCAGGGAGAGATTCAGTACGTGCACATCGTGACAGCCCAAGG
genomic: TGGGTCATGTTATACATATGCTTGAAGCTGAAGAATCCCCCTTCAGAGATgtatgcatcc ... tttatattagGATCGTAGAGCAGGGAGAGATTCAGTACGTGCACATCGTGACAGCCCAAGG
EST: gi|22014158|gb|BQ799192.1|BQ799192
EST:     TGGGTCATGTTATACATATGCTTGAAGCTGAAGAATCCCCCTTCAGAGAT                         GATCGTAGAGCAGGGAGAGATTCAGTACGTGCACATCGTGACAGCCCAAGG
genomic: TGGGTCATGTTATACATATGCTTGAAGCTGAAGAATCCCCCTTCAGAGATgtatgcatcc ... tttatattagGATCGTAGAGCAGGGAGAGATTCAGTACGTGCACATCGTGACAGCCCAAGG
EST: gi|30297605|gb|CB974399.1|CB974399
EST:     TGGGGCATGTTATACATATGCTTGAAGCTGAAGAATCCCCCTTCAGAGAT                         GATCGTAGAGCAGGGAGAGATTCAGTACGTGCACATCGTGACAGCCCAAGG
genomic: TGGGTCATGTTATACATATGCTTGAAGCTGAAGAATCCCCCTTCAGAGATgtatgcatcc ... tttatattagGATCGTAGAGCAGGGAGAGATTCAGTACGTGCACATCGTGACAGCCCAAGG
EST: gi|110695044|gb|EE072613.1|EE072613
EST:     TGGGTCATGTTATACATATGCTTGAAGCTGAAGAATCCCCCTTCAGAGAT                         GATCGCAGAGCAGGGAGAGATTCAGTACGTGCACATCGTGACAGCCCAAGG
genomic: TGGGTCATGTTATACATATGCTTGAAGCTGAAGAATCCCCCTTCAGAGATgtatgcatcc ... tttatattagGATCGTAGAGCAGGGAGAGATTCAGTACGTGCACATCGTGACAGCCCAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaatgctatcgttctctgtttcattaactcgtgatgctatggttttatattagGATCGTAGAGCAGGGAGAGATTCAGTACGTGCACATCGTGACAGCCCAAGGAATGGATTGATGGAGAAGCGAGTCACAGAATCAGGGGATAGTAGTGGGT
                       cattaac  putative branch site (score: 2)
 tatggttttatatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cttctgttgctaaagaatactagaattttccccacattacccctctttaatgctatcgttctctgtttcattaactcgtgatgctatggttttatattagGATCGTAGAGCAGGGAGAGATTCAGTACGTGCACATCGTGACAGCCCAAGGAATGGATTGATGGAGAAGCGAGTCACAGAATCAGGGGATAGTAGTGGGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- -ctgttgc
- - - - - taaagaa
- - - - - - - - - - - - - - tccccac
- - - - - - - - - - - - - - - - - - - - ccctctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgct