Sequence
atgc intronic sequence ATGC exonic sequencegttagtgttgattgctattttcatttttctgcctgggtttattacagtatttccaatgcacatatcggtaaggaatagataagagttcagtgggatttgaatgatgtagcgttaatttttgtagGGCCTATGACAAAGCTGCAATTAAATGTAATGGCAAAGAGGCTGTCACCAACTTCGATCCCAGTATTTATGAAAATGAGCTCAACTCATCCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g00220.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA01G39520.1 (Glycine max), 3'ss of exon 6
gttagtgttgattgctattttcatttttctgcctgggtttattacagtatttcca--atgcacatatcggtaaggaatagataagagttcagtgggatttgaatgatgtagcgttaatttttgt--agGGCCTATGACAAAGCTGCAATTAAATGTAATGGCAAAGAGGCTGTCACCAACTTCGATCCCAGTATTTATGAAAATGAGCTCAACTCATCCG
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--------------------gtatttatctactttg-tttaccttgtcaatttgatcttgtagaaagtagtcaacaata--tggaggtatgctaggcttttaatttttttgacacattttgtatatagGGCATATGATAAAGCAGCAATAAAATGCAATGGCAAAGAGGCTGTCACCAATTTTGATCCCAGCATCTATGATGGTGAGCTTAATTCTG---
upper sequence: Vv07s0031g00220.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA01G39520.2 (Glycine max), 3'ss of exon 6
gttagtgttgattgctattttcatttttctgcctgggtttattacagtatttccaa--tgcacatatcggtaaggaatagataagagttcagtgggatttgaatgatgtagcgttaatttttgta--gGGCCTATGACAAAGCTGCAATTAAATGTAATGGCAAAGAGGCTGTCACCAACTTCGATCCCAGTATTTATGAAAATGAGCTCAACTCATCCG
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--------------------gtatttatctactttg-tttaccttgtcaatttgatcttgtagaaagtagtcaacaata--tggaggtatgctaggcttttaatttttttgacacattttgtatatagGGCATATGATAAAGCAGCAATAAAATGCAATGGCAAAGAGGCTGTCACCAATTTTGATCCCAGCATCTATGATG------------------
upper sequence: Vv07s0031g00220.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA11G05720.1 (Glycine max), 3'ss of exon 5
gttagtgttgattgctattttcatttttctgcctgggtttattacagtatttccaat--gcacatatcggtaaggaatagataagagttcagtgggatttgaatgatgtagcgttaatttttgta--gGGCCTATGACAAAGCTGCAATTAAATGTAATGGCAAAGAGGCTGTCACCAACTTCGATCCCAGTATTTATGAAAATGAGCTCAACTCATCCG
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----------------gtatttatttatcttacttagttttccttgtcaatttgatttggtagaaaatagtcaacaatattgatgtatgctaggatttttaaatctttttggcacattttgtatatagGGCATATGATAAAGCAGCAATAAAATGTAATGGCAAGGAGGCTGTCACCAATTTTGATCCTAGCATCTATGATAGTGAGCTTAATTCTG---
upper sequence: Vv07s0031g00220.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA05G18170.1 (Glycine max), 3'ss of exon 6
---------------------gttagtgttgattgctattttcatttttctgcctgggtttattacagtatttccaatgcacatatcggtaaggaatagataagagttcag---tgggatttgaatgatgtagcgttaattt-ttgtagGGCCTATGACAAAGCTGCAATTAAATGTAATGGCAAAGAGGCTGTCACCAACTTCGATCCCAGTATTTATGAAAATGAGCTCAACTCATCCG
| | |||| | | | | |||| ||| ||||| ||| || || || | | || || | |||| | || ||| ||| || | ||| |||||| |||||||||||||| || ||||| || ||||||||||| || || || || |||||||| || ||||| ||||||||||| ||
gtaattaacatatcttgttttggtcacgttgttaattgtcatttctttttcacctt--ccaattactagattacccatctctatcaaagaatataaactattattattcatctttagggttttaattttggtccacacttttaccatagGGCTTATGACAAAGCTGCCATAAAATGCAACGGCAAAGAGGCGGTAACAAATTTTGATCCCAGCATCTATGACAATGAGCTCAATTCCG---
upper sequence: Vv07s0031g00220.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA17G18640.2 (Glycine max), 3'ss of exon 6
----------------------------------------gttagtgttgattgctattttcatttttctgcctgggtttattacagtatttccaatgcacatatcggtaaggaatag-ataagagttcagtgggatttgaatgatgtagcgttaattt-ttgtagGGCCTATGACAAAGCTGCAATTAAATGTAATGGCAAAGAGGCTGTCACCAACTTCGATCCCAGTATTTATGAAAATGAGCTCAACTCATCCG
| ||| |||| ||||| ||| | | || | ||| ||| | | || | || || | || | || ||| || | | | |||| |||||| ||||||||||| || || ||||| ||||||||||||||||| || || || |||||||| || || | ||||||||||| |
gtaactagctaactagttacatatttagttttaatttggtcacattgtcaattgtcatttttttttcaccttccaatttctagattacccttctctagcaaagaatataaactattactattattcatctttagggttttcattttattccacatatttaccatagGGCTTATGACAAAGCCGCCATAAAATGCAATGGCAAAGAGGCTGTAACGAATTTTGATCCCAGCATCTACAACAATGAGCTCAATACCG---
upper sequence: Vv07s0031g00220.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT4G36920.1 (Arabidopsis thaliana), 3'ss of exon 6
gttagtgttgattgctattttcatttttctgcctgggtttattacagtatttccaatgcacatatcggtaaggaatagataagagttcagtgggatttgaatgatgtagcgtta---atttttgtagGGCCTATGACAAAGCTGCAATTAAATGTAATGGCAAAGAGGCTGTCACCAACTTCGATCCCAGTATTTATGAAAATGAGCTCAACTCATCCG
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------------------------------gtaaatgtctttttgtttgattctacaacacacattgttgtataatgtgttttt-ctcgttactaattgattttcattattttatatataatcacagAGCTTACGATAAAGCTGCAATCAAATGTAACGGCAAAGACGCCGTGACCAACTTTGATCCGAGTATTTACGATGAGGAACTCAATGCCG--- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaggaatagataagagttcagtgggatttgaatgatgtagcgttaatttttgtagGGCCTATGACAAAGCTGCAATTAAATGTAATGGCAAAGAGGCTGTCACCAACTTCGATCCCAGTATTTATGAAAATGAGCTCAACTCATCCG
cgttaat putative branch site (score: 4)
tttttgt CT-rich tract
ttaatttttgta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttagtgttgattgctattttcatttttctgcctgggtttattacagtatttccaatgcacatatcggtaaggaatagataagagttcagtgggatttgaatgatgtagcgttaatttttgtagGGCCTATGACAAAGCTGCAATTAAATGTAATGGCAAAGAGGCTGTCACCAACTTCGATCCCAGTATTTATGAAAATGAGCTCAACTCATCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA