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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgcttctttattttcttttgattatgatctgtaatttgataaacctggaatgcacattcttttattcattaggctctgaaggtctgacaatgtaataaacagGCTAAGCGCAAGAGGATTGCTGAATTATCTGTTGGTGCATTACCTTTGGAGTATCACAGAAAATCTCACTGGGATTTTGTCCTTGAGGAAATGGCATGGT

Basic information

species Vitis vinifera
transcript Vv07s0005g06680.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g06680.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G46710.1 (Glycine max), 3'ss of exon 7
gttgcttctttattttcttttgattatgatctgtaatttgataaacctggaatgcacattcttttattcattaggctctgaaggtctgaca--atgtaataa-acagGCTAAGCGCAAGAGGATTGCTGAATTATCTGTTGGTGCATTACCTTTGGAGTATCACAGAAAATCTCACTGGGATTTTGTCCTTGAGGAAATGGCATGGT
                 |||  ||| |  | |  | ||  ||  |       |      |   ||  || |||  || | ||  |||||||  || |  ||| |||||  ||||| ||||||||||| || ||||||||| |  |||| || |   ||   || ||||| |||||||||| ||||||||||||||||||| ||||||
---------------gttttaaatttttgtttccatttctattgattgttcttattttgtgggtttgtctttaaactataaacttctgacatcatatgttaacacagGTCAAGCGGAAGAGGATTGCAGAGTTATCTGTTCGCACATTGCCCTCACAGATCCATAGAAAGTCTCACTGGGGTTTTGTCCTTGAGGAAATGACATGGT

upper sequence: Vv07s0005g06680.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA16G14060.1 (Glycine max), 3'ss of exon 7
gttgcttctttattttcttttgattatgatctgtaatttgataaacctggaatgcacattcttttattcattaggctctgaaggtctgaca--atgtaataaacagGCTAAGCGCAAGAGGATTGCTGAATTATCTGTTGGTGCATTACCTTTGGAGTATCACAGAAAATCTCACTGGGATTTTGTCCTTGAGGAAATGGCATGGT
||| ||  ||    |||  ||      ||| | |  ||  |       |  |       |  |||   || ||   | | ||||||||| |  ||| | ||||||||| ||||| ||||| ||||| ||||||||| ||    | ||| |     || | |||||||| || ||||||| |||||| || ||||||||||||||| 
gtttctatttctggttccatttccatggatttctgtttatactttttggttaaatttggttgtttgggcaataaattttaaaggtctgatataatgcactaaacagGCCAAGCGGAAGAGAATTGCAGAATTATCTCTTCACTCCTTATCCACACAGAACCACAGAAAGTCACACTGGGGTTTTGTTCTAGAGGAAATGGCATGGC

upper sequence: Vv07s0005g06680.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT3G24870.1 (Arabidopsis thaliana), 3'ss of exon 5
-gttgcttctttattttcttttgattatgatctgtaatttgataaacctggaatgcacattcttttat--tcattaggctctgaaggtctgacaatgta-ataaacagGCTAAGCGCAAGAGGATTGCTGAATTATCTGTTGGTGCATTACCTTTGGAGTATCACAGAAAATCTCACTGGGATTTTGTCCTTGAGGAAATGGCATGGT
  || ||| || || ||   ||||| ||  |  |  || |  |   | | |||   |   | || | |    | |   || |  | || |||||   || || ||||||| |||   || || ||||| |||||||||  |||| |   |||  |||||   |     |||||||| |||||||||||||| || |||||||||||| 
gttttctttttaatcttgacttgatgatttttagctatctagttttcgtagaagttatgatgttatgtacctactcatctttttatgtatgacataatacattaacagGCAAAGAAAAAAAGAATTGCCGAATTATCTTGTGGTACTGCACCAGTGGAGGTCCGTGAGAAATCTCAATGGGATTTTGTCCTCGAAGAAATGGCATGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatgcacattcttttattcattaggctctgaaggtctgacaatgtaataaacagGCTAAGCGCAAGAGGATTGCTGAATTATCTGTTGGTGCATTACCTTTGGAGTATCACAGAAAATCTCACTGGGATTTTGTCCTTGAGGAAATGGCATGGT
                                  gtctgac  putative branch site (score: 3)
        attcttttattcatta  TA-rich tract