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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttatcttgtattttagtgttctctgttggatatcacttaaatgaagagctttcttagtcaatgtgttacactgtttctactatgcatgcagGCCTTAATCCATCTAGAATCAATTCAATCACTTCCAAAGCGAATTGATCATTTAGATTCATTGGTTGATAAGTTCATTCATACCAACCCTGAAAGCCCCA

Basic information

species Vitis vinifera
transcript Vv07s0005g04290.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71876803|gb|DT025858.1|DT025858
EST:     TTTTAGTTGAAGCTCTTGAGCATGTTCAACTGTCAAAACCACTTCTTGAG                         GCCTTAATCCATCTAGAATCAATTCAATCACTTCCAAAGCGAATTGATCAT
genomic: TTTTAGTTGAAGCTCTTGAGCATGTTCAACTGTCAAAACCACTTCTTGAGgtatttatct ... atgcatgcagGCCTTAATCCATCTAGAATCAATTCAATCACTTCCAAAGCGAATTGATCAT
EST: gi|110428547|gb|EC995022.1|EC995022
EST:     TTTTAGTTGAAGCTCTTGAGCATGTTCAACTGTCAAAACCACTTCTTGAG                         GCCTTAATCCATCTAGAATCAATTCAATCACTTCCAAAGCGAATTGATCAT
genomic: TTTTAGTTGAAGCTCTTGAGCATGTTCAACTGTCAAAACCACTTCTTGAGgtatttatct ... atgcatgcagGCCTTAATCCATCTAGAATCAATTCAATCACTTCCAAAGCGAATTGATCAT
EST: gi|71867577|gb|DT016632.1|DT016632
EST:     TTTTAGTTGAAGCTCTTGAGCATGTTCAACTGTCAAAACCACTTCTTGAG                         GCCTTAATCCATCTAGAATCAATTCAATCACTTCCAAAGCGAATTGATCAT
genomic: TTTTAGTTGAAGCTCTTGAGCATGTTCAACTGTCAAAACCACTTCTTGAGgtatttatct ... atgcatgcagGCCTTAATCCATCTAGAATCAATTCAATCACTTCCAAAGCGAATTGATCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaatgaagagctttcttagtcaatgtgttacactgtttctactatgcatgcagGCCTTAATCCATCTAGAATCAATTCAATCACTTCCAAAGCGAATTGATCATTTAGATTCATTGGTTGATAAGTTCATTCATACCAACCCTGAAAGCCCCA
             tttctta  TA-rich tract