Sequence
atgc intronic sequence ATGC exonic sequence...ttcaagcactacatggagttttctgtcatgctatatcttgttcttgaattcttttgctgaaaatttcaaatctgtaactctatttttgtttggatagcagAGGTATTGAGATCACTGAAGCCCTGCGATTACAGATGGAAGTTCAGAAGAGGCTGCACGAACAACTTGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g04120.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA10G04540.1 (Glycine max), 3'ss of exon 7
ttcaagcactacat--ggagttttctgtcatgctatatcttgttcttg--aattcttttgctgaaaatttcaaatctgtaactctatttttgtttggatagcagAGGTATTGAGATCACTGAAGCCCTGCGATTACAGATGGAAGTTCAGAAGAGGCTGCACGAACAACTTGAG
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----aagactacaataagggcgatatatgattccatgtaaagattttggcaatattttagacaaaggaattattatgctgactttactattgcattattgacagTGGTATTGAGATCACTGAAGCTCTACGATTACAAATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAG
upper sequence: Vv07s0005g04120.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA03G32350.1 (Glycine max), 3'ss of exon 7
---ttcaa--gcactacatggagttttctgt-catgctatatcttgttcttgaattcttttgctgaaaatttcaaatctgtaactctatttttgtttggatagcagAGGTATTGAGATCACTGAAGCCCTGCGATTACAGATGGAAGTTCAGAAGAGGCTGCACGAACAACTTGAG
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atatttaatggcactatgtaaattttttggagcatatt-tgacacatgcacagacatgaatactaata--tttatgcc---gactttaccactgaattgttaacagTGGTATTGAGATCACTGAAGCTCTGAGGTTGCAGATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAG
upper sequence: Vv07s0005g04120.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA13G18800.1 (Glycine max), 3'ss of exon 4
ttcaagcactacatggagttttctgtcatgctatatcttgttcttga-attcttttgctgaaaatttcaaatctg-taactctatttttgtttggatagcagAGGTATTGAGATCACTGAAGCCCTGCGATTACAGATGGAAGTTCAGAAGAGGCTGCACGAACAACTTGAG
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-aagaccacaataagg-gcgatatatgattccatgtaaagattttggcaatattttagacacagtaattattatgctgactttactattgcattattgacagTGGTATTGAGATCACTGAAGCTCTACGACTACAAATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAG
upper sequence: Vv07s0005g04120.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA19G35080.1 (Glycine max), 3'ss of exon 7
-----ttcaa--gcactacatggagttttctgtcatgctatatcttgttcttgaattcttttgctgaaaatttcaaatctgtaactctatttttgtttggatagcagAGGTATTGAGATCACTGAAGCCCTGCGATTACAGATGGAAGTTCAGAAGAGGCTGCACGAACAACTTGAG
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taatatttaatggcactatgtaaagttttttg----ggcatatttgacatgcagagacatgaatactaatttttatgc---tgactttatgactgaattgttgacagTGGTATTGAGATCACTGAAGCTCTGAGGCTGCAGATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|77586746|gb|DV222511.1|DV222511EST: GAGAAAAGATTGACATCCATTGAAGAAATGTCGTCTCTGGACTTGAAAAC AGGTATTGAGATCACTGAAGCCCTGCGATTACAGATGGAAGTTCAGAAGAG
genomic: GAGAAAAGATTGACATCCATCGAAGAAATGTCGTCTCTGGACTTGAAAACgtaaattaac ... tggatagcagAGGTATTGAGATCACTGAAGCCCTGCGATTACAGATGGAAGTTCAGAAGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaattcttttgctgaaaatttcaaatctgtaactctatttttgtttggatagcagAGGTATTGAGATCACTGAAGCCCTGCGATTACAGATGGAAGTTCAGAAGAGGCTGCACGAACAACTTGAG
ctgtaac putative branch site (score: 3)
ctctatttttgttt CT-rich tract
tgaaaatttcaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttcaagcactacatggagttttctgtcatgctatatcttgttcttgaattcttttgctgaaaatttcaaatctgtaactctatttttgtttggatagcagAGGTATTGAGATCACTGAAGCCCTGCGATTACAGATGGAAGTTCAGAAGAGGCTGCACGAACAACTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
-tcaagca
- - - - -tacatgg
- - - - - - - - - - - - -tcatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaatt