1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gttattgtccccaatgctttattttcatgctttgacattgctattgagacagtttcttctttaccctgttatattgttaaaacagttgactcaccatttatttctgatcagGTACCTATTGATGTTTTTCAAGGAATTACAGATGAAGATGCTGCTAAGGTTGTAGATGGTTTGGCTCCCAAGGTGGCAGATAGAAATGCTTCGATAGAGC
species | Vitis vinifera |
transcript | Vv07s0005g03790.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAACCAGTATTGAAGACCTTGCAGAGAAATTCCCTGACATGATTGTCAAG GTACCTATTGATGTTTTTCAAGGAATTACAGATGAAGATGCTGCTAAGGTTEST: gi|110397988|gb|EC964029.1|EC964029
genomic: GAACCAGCATCGAAGACCTTGCAGAGAAATTCCCTGACATGATTGTCAAGgttattgtcc ... ttctgatcagGTACCTATTGATGTTTTTCAAGGAATTACAGATGAAGATGCTGCTAAGGTT
EST: GAACCAGTATTGAAGACCTTGCAGAGAAATTCCCTGACATGATTGTCAAG GTACCTATTGATGTTTTTCCAAGGAATTACAGATGAAGATGCTGCTAAGGTEST: gi|30305880|gb|CB982674.1|CB982674
genomic: GAACCAGCATCGAAGACCTTGCAGAGAAATTCCCTGACATGATTGTCAAGgttattgtcc ... ttctgatcagGTACCTATTGATGTTTTTC-AAGGAATTACAGATGAAGATGCTGCTAAGGT
EST: GAACCAGTATCGAAGACCTTGCAGAGAAATTCCCTGACATGATTGTCAAG GTACCTATTGATGTTTTTCAAGGAATTACAGATGAAGATGCTGCTAAGGTTEST: gi|110733074|gb|EE108915.1|EE108915
genomic: GAACCAGCATCGAAGACCTTGCAGAGAAATTCCCTGACATGATTGTCAAGgttattgtcc ... ttctgatcagGTACCTATTGATGTTTTTCAAGGAATTACAGATGAAGATGCTGCTAAGGTT
EST: GAACCAGTATTGAAGACCTTGCAGAGAAATTCCCTGACATGATTGTCAAG GTACCTATTGATGTTTTTCAAGGAATTACAGATGAAGATGCTGCTAAGGTTEST: gi|161716900|gb|FC064979.1|FC064979
genomic: GAACCAGCATCGAAGACCTTGCAGAGAAATTCCCTGACATGATTGTCAAGgttattgtcc ... ttctgatcagGTACCTATTGATGTTTTTCAAGGAATTACAGATGAAGATGCTGCTAAGGTT
EST: GAACCAGTATTGAAGACCTTGCAGAGAAATTCCCTGACATGATTGTCAAG GTACCTATTGATGTTTTTCAAGGAATTACAGATGAAGATGCTGCTAATGTTEST: gi|110428351|gb|EC994820.1|EC994820
genomic: GAACCAGCATCGAAGACCTTGCAGAGAAATTCCCTGACATGATTGTCAAGgttattgtcc ... ttctgatcagGTACCTATTGATGTTTTTCAAGGAATTACAGATGAAGATGCTGCTAAGGTT
EST: CTGACATGATTGTCAAG GTACCTATTGATGTTTTTCAAGGAATTACAGATGAAGATGCTGCTAAGGTTEST: gi|110688710|gb|EE067574.1|EE067574
genomic: CTGACATGATTGTCAAGgttattgtcc ... ttctgatcagGTACCTATTGATGTTTTTCAAGGAATTACAGATGAAGATGCTGCTAAGGTT
EST: GAACCAGTATCGAAGACCTTGCAGAGAAATTCCCTGACATGATTGTCAAG GTACCTATTGATGTTTTTCAAGGAATTACAGATGAAGATGCTGCTAAGGTTEST: gi|161713591|gb|FC062524.1|FC062524
genomic: GAACCAGCATCGAAGACCTTGCAGAGAAATTCCCTGACATGATTGTCAAGgttattgtcc ... ttctgatcagGTACCTATTGATGTTTTTCAAGGAATTACAGATGAAGATGCTGCTAAGGTT
EST: GAACCAGTATTGAAGACCTTGCAGAGAAATTCCCTGACATGATTGTCAAG GTACCTATTGATGTTTTTCAAGGAATTACAGATGAAGATGCTGCTAAGGTT
genomic: GAACCAGCATCGAAGACCTTGCAGAGAAATTCCCTGACATGATTGTCAAGgttattgtcc ... ttctgatcagGTACCTATTGATGTTTTTCAAGGAATTACAGATGAAGATGCTGCTAAGGTT
ttctttaccctgttatattgttaaaacagttgactcaccatttatttctgatcagGTACCTATTGATGTTTTTCAAGGAATTACAGATGAAGATGCTGCTAAGGTTGTAGATGGTTTGGCTCCCAAGGTGGCAGATAGAAATGCTTCGATAGAGC
gactcac putative branch site (score: 2)
tttatttct putative PPT
tgttatattgttaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttattgtccccaatgctttattttcatgctttgacattgctattgagacagtttcttctttaccctgttatattgttaaaacagttgactcaccatttatttctgatcagGTACCTATTGATGTTTTTCAAGGAATTACAGATGAAGATGCTGCTAAGGTTGTAGATGGTTTGGCTCCCAAGGTGGCAGATAGAAATGCTTCGATAGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT