1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcacatgtggcaatgtcttataatatgtagctgctaaatgctattcttgatctgacctatacttggtggatttttcatattcaaaacatctttatggcagGTTTTGCACTTGCGGGGTCAGCTTCTTGTTCTCAAGAGATGCCAAGATAATAAGGTTGATGACGAACTTGCTGCACCTCTCCTTTAGCATCCTGTGTCAT
species | Vitis vinifera |
transcript | Vv07s0005g03760.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGTATAGACTTGTTTCAACTGAAAATCTTCCCACTTTGCTTCAAGAAGAG GTTTTGCACTTGCGGGGTCAGCTTCTTGTTCTCAAGAGATGCCAAGATAATEST: gi|352763404|gb|FQ471716.1|FQ471716
genomic: TGTATAGACTTGTTTCAACTGAAAATCTTCCCACTTTGCTTCAAGAAGAGgtatggttta ... tttatggcagGTTTTGCACTTGCGGGGTCAGCTTCTTGTTCTCAAGAGATGCCAAGATAAT
EST: TGTATAGACTTGTTTCAACTGAAAATCTTCCCACTTTGCTTCAAGAAGAG GTTTTGCACTTGCGGGGTCAGCTTCTTGTTCTCAAGAGATGCCAAGATAAT
genomic: TGTATAGACTTGTTTCAACTGAAAATCTTCCCACTTTGCTTCAAGAAGAGgtatggttta ... tttatggcagGTTTTGCACTTGCGGGGTCAGCTTCTTGTTCTCAAGAGATGCCAAGATAAT
cttgatctgacctatacttggtggatttttcatattcaaaacatctttatggcagGTTTTGCACTTGCGGGGTCAGCTTCTTGTTCTCAAGAGATGCCAAGATAATAAGGTTGATGACGAACTTGCTGCACCTCTCCTTTAGCATCCTGTGTCAT
atctgac putative branch site (score: 3)
catcttt putative PPT
atttttcatattcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcacatgtggcaatgtcttataatatgtagctgctaaatgctattcttgatctgacctatacttggtggatttttcatattcaaaacatctttatggcagGTTTTGCACTTGCGGGGTCAGCTTCTTGTTCTCAAGAGATGCCAAGATAATAAGGTTGATGACGAACTTGCTGCACCTCTCCTTTAGCATCCTGTGTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
tcacatg
- - - - - caatgtc
- - - - - - - - - - - - - - - ctgctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacat