Sequence
atgc intronic sequence ATGC exonic sequence...ttctttgatttttctctttgaaactttcatggagttaagcttgccagttttttttgttaagtgcaattcagatattaattcccttgctttctctttacagTATTTAAAAGAGCAAAGGCTTCCTCCTCAGACATTTATACCTCTTCAGTCAGTCCGGGTAAAGCCAATTGTGGAGAAATTGCGCACCTTGGGTGGTACTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g03450.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA13G18470.1 (Glycine max), 3'ss of exon 6
--ttctttgatttttctctttgaaactttcatggagttaagcttgccagttttttttgttaagtgcaattcagatattaatt----cccttgctttctctttacagTATTTAAAAGAGCAAAGGCTTCCTCCTCAGACATTTATACCTCTTCAGTCAGTCCGGGTAAAGCCAATTGTGGAGAAATTGCGCACCTTGGGTGGTACTG
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aaaattgcaattttgcctgtttgaacattgaagctctataattggt---ttcattttgttatatgtatt---gatattgattggaatatttttctctgcttttcagTATTTAAAAGATCAGAGGCTTCCTCCCCAGACATTTATTCCTCTGGAATCAGTTCGGGTGAAGCCAATAATGGAAAGATTGCGCACATTAGGGGGTACAG
upper sequence: Vv07s0005g03450.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA10G04300.2 (Glycine max), 3'ss of exon 6
ttctttgatttttctctttgaaactttcatggagttaagcttgccagttttttttgttaagtgcaattcagatattaattcccttgctttctctttacagTATTTAAAAGAGCAAAGGCTTCCTCCTCAGACATTTATACCTCTTCAGTCAGTCCGGGTAAAGCCAATTGTGGAGAAATTGCGCACCTTGGGTGGTACTG
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aattgcaactttgcctgtttgaatattgaagctctataattggtttcttattgttatatgtattgatattgattggaatattgatttctttgcttttcagTATTTAAAAGATCAGAGGCTTCCTCCCCAGACATTTATTCCTCTGGAATCAGTTCGGGTGAAGCCAATAATGGAAAGATTGCGCACATTACGGGGTACAG
upper sequence: Vv07s0005g03450.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT3G54670.1 (Arabidopsis thaliana), 3'ss of exon 6
--ttctttgatttttctctttgaaactttcatggagttaagcttgccagttttttttgttaagtgcaattcagatattaattcccttgctttctctttacagTATTTAAAAGAGCAAAGGCTTCCTCCTCAGACATTTATACCTCTTCAGTCAGTCCGGGTAAAGCCAATTGTGGAGAAATTGCGCACCTTGGGTGGTACTG
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tgcttttaagcaatttgaagtatatgtttaagaggactttgtaccactgctctaggtatgtgatgaaat--gagttcttcttttttttttggtaatttgcagTACTTGAAAGAGCAAAGGCTTCCTCCTATGACATTTATTCCTCTTCAGTCAGTACGTGTCAAGCAAGTGTTTGAAAGATTGAGAAATTTGGGTGGCACAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agttttttttgttaagtgcaattcagatattaattcccttgctttctctttacagTATTTAAAAGAGCAAAGGCTTCCTCCTCAGACATTTATACCTCTTCAGTCAGTCCGGGTAAAGCCAATTGTGGAGAAATTGCGCACCTTGGGTGGTACTG
tattaat putative branch site (score: 2)
ttaattcccttgcttt CT-rich tract
aattcagatattaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttctttgatttttctctttgaaactttcatggagttaagcttgccagttttttttgttaagtgcaattcagatattaattcccttgctttctctttacagTATTTAAAAGAGCAAAGGCTTCCTCCTCAGACATTTATACCTCTTCAGTCAGTCCGGGTAAAGCCAATTGTGGAGAAATTGCGCACCTTGGGTGGTACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - -ttcatgg
- - - - - - - - - - - - - - - - - - - -cttgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caattca