Sequence
atgc intronic sequence ATGC exonic sequence...gtcatgagtcaaaacaagcagtggatgacaagacaactgaaaatatttctttaaaaagaaattatttcatttctttttcttactaaggtagttttaccagGTTGATGAGAAGCTGAAAACAGTTCTACTCACAGAACAGGGTTATGAGGATGCCGAGGAAATTCTGGCTCTGAAAGATTTATATGATCCTCGAGAACAGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g02610.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA02G01060.1 (Glycine max), 3'ss of exon 6
gtcatgagtcaaaacaagcagtggatgacaagacaa----ctgaaaatatttctttaaaaagaaattatttcat-ttctttttcttactaaggtagttttaccagGTTGATGAGAAGCTGAAAACAGTTCTACTCACAGAACAGGGTTATGAGGATGCCGAGGAAATTCTGGCTCTGAAAGATTTATATGATCCTCGAGAACAGT
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---atgacttattttatct--ttgacgacaggagtagatgctcaatttattaaaataagagtggatctttgaatattattcttctaactgaaattgtctttgcagGTAGACGAAAAACAGAAAACAGTTCTACTTTCTGAGCAAGGTTATGAAGATGCTGAAGAAATTTTAGCTGTCAAAGATTTATATGATCCTCGAGAACAGT
upper sequence: Vv07s0005g02610.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA10G27810.1 (Glycine max), 3'ss of exon 6
gtcatgagtcaaaacaagcagtggatgacaaga-caactga--aaatatttctttaaaaagaaattatttcat-ttctttttcttactaaggtagttttaccagGTTGATGAGAAGCTGAAAACAGTTCTACTCACAGAACAGGGTTATGAGGATGCCGAGGAAATTCTGGCTCTGAAAGATTTATATGATCCTCGAGAACAGT
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--tataacttattttatct--tcaatgacaggagtgaatgctcaattattaaaataaaagtggatctttgaatattcttcttcttactgaaattgtctttgcagGTAGACGAAAAACAAAAATCAGTTCTACTTTCTGAGCAAGGTTATGAAGATTCTGAAGAAATTTTAGCTGTCAAAGATTTATATGATCCTCGAGAACAGT
upper sequence: Vv07s0005g02610.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT4G01800.1 (Arabidopsis thaliana), 3'ss of exon 5
gtcatgagtcaaaacaagcagtggatgacaagacaactgaaaatatttctttaaaaagaaattatttcatttctt-tttcttactaaggtagttt----taccagGTTGATGAGAAGCTGAAAACAGTTCTACTCACAGAACAGGGTTATGAGGATGCCGAGGAAATTCTGGCTCTGAAAGATTTATATGATCCTCGAGAACAGT
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gtaagaatcctcagttatttcttt-tgttgtgtgaaattttatagtggagttggcaatccatcttccaaattctaactggtcactaaggttttttggtgtggcagGTTGATGAAAAGCAGAAGACTGTTTTACTGACGGAACAGGGTTATGAGGATGCAGAAGAAATCCTGGACGTGAAAGATTTGTATGATCCCCGTGAACAGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttctttaaaaagaaattatttcatttctttttcttactaaggtagttttaccagGTTGATGAGAAGCTGAAAACAGTTCTACTCACAGAACAGGGTTATGAGGATGCCGAGGAAATTCTGGCTCTGAAAGATTTATATGATCCTCGAGAACAGT
ttcttac putative branch site (score: 2)
ttttacc putative PPT
ttaaaaagaaattatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcatgagtcaaaacaagcagtggatgacaagacaactgaaaatatttctttaaaaagaaattatttcatttctttttcttactaaggtagttttaccagGTTGATGAGAAGCTGAAAACAGTTCTACTCACAGAACAGGGTTATGAGGATGCCGAGGAAATTCTGGCTCTGAAAGATTTATATGATCCTCGAGAACAGT
- catgagt
- - - - - aaaacaa
- - - - - - - - - - gtggatg
- - - - - - - - - - - - - - -aagacaa
- - - - - - - - - - - - - - - - - - - gaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaaa