Sequence
atgc intronic sequence ATGC exonic sequencegttagtaatatttctaatttatttgatctttaccattcatggttccttgtgcttttctttctaataaattacccaagcatttctttccaatgaaaacgtacattctgggcaaaatagttagacaactggactgtcttgctttcagGCCAGACCAATTCTTAGAGACAAGGATCGGCTTGAAGAGCTAGCTGATGAAAGGCTTGCTGGAAAGTATCCAAAGGAAGATTTTGTACGAGTTTGCACAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g01590.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA03G37910.1 (Glycine max), 3'ss of exon 8
gttagtaatatttctaat----ttatttgatctttacca--ttcatggt---tccttgtgcttttc---tttctaataaattac-ccaagcatttctttccaatgaaaac---gtacattctgggcaaaatagttagacaactggactgtcttgc-tttcagGCCAGACCAATTCTTAGAGACAAGGATCGGCTTGAAGAGCTAGCTGATGAAAGGCTTGCTGGAAAGTATCCAAAGGAAGATTTTGTACGAGTTTGCACAA
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gttagttccataccttgtgagacaatgttatttatgtcaagttcagagcaacttcccatgttttctatatttatactaggaaatatgaaagatttaatttaaatccatcctttgaaacttttacattgagtaggtagttagtaagttcatttttcctttcagGCTAGGCCAATCCTTAGAGATAAGGACCGGTTGGAAGAGATTGCTGATCCAAGACTTGGTGGAAAGTATCCAAAGGAAGATTTTGTACGTGTTTGCACTA
upper sequence: Vv07s0005g01590.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA10G01520.1 (Glycine max), 3'ss of exon 6
gttagtaatatttctaatttatttgatctttaccattcatggttccttgtgcttttctttctaataaattacccaagcatttctttccaatgaaaacgtacattctgggcaaaatagttagacaactggactgtcttgctttcagGCCAGACCAATTCTTAGAGACAAGGATCGGCTTGAAGAGCTAGCTGATGAAAGGCTTGCTGGAAAGTATCCAAAGGAAGATTTTGTACGAGTTTGCACAA
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----------------------------gttag-attcatgcctagacacttacacattctcattaagtt---caaaatttccatt----tggagttttacatgagatagatagacaataatttactgggctattct--tttcagGCAAGGCCAATTCTTAGAGATAAGGACCGGTTGGAAGAACTTGCCGATCCAAGGCTTGGGGGAAGGTACCCAAAGGAAGATTTTGTACGTGTTTGCACAA
upper sequence: Vv07s0005g01590.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA19G40500.1 (Glycine max), 3'ss of exon 7
----------------gttagtaatatttctaatttatttgatctttaccattcatggttccttgtgcttttctttctaataaattacccaagc---atttctttccaatg--------aaaacgtaca---ttctgggcaaaatagttagacaactggactgtcttgc-tttcagGCCAGACCAATTCTTAGAGACAAGGATCGGCTTGAAGAGCTAGCTGATGAAAGGCTTGCTGGAAAGTATCCAAAGGAAGATTTTGTACGAGTTTGCACAA
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gttagttccataccttgttagtcacatgttacttatgtcaaattcagagcatcttcccatgtttgctatatttatactaggaaatgtcgaggatttaatttaattcaaatccatcctttgaaacttttaaacttttacattaagtaggtagttaataagttcatttttcctttcagGCTAGGCCAATCCTTAGAGATAAGGAGCGGTTGGAAGAGATTGCTGATCCAAGACTTGGGGGAGAGTATCCAAAGGAAGATTTTGTACGTGTTTGCACTA
upper sequence: Vv07s0005g01590.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA02G01480.1 (Glycine max), 3'ss of exon 6
gttagtaatatttctaatttatttgatctttaccattcatggttccttgtgcttttctttctaataaattacccaagcatttctttccaatgaaaacgtacattctgggcaaaatagttagacaactggactgtcttgctttcagGCCAGACCAATTCTTAGAGACAAGGATCGGCTTGAAGAGCTAGCTGATGAAAGGCTTGCTGGAAAGTATCCAAAGGAAGATTTTGTACGAGTTTGCACAA
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--------------------gttagattcatacc-----tagacacttacacattctcat----taagtt---caaaatttccatt----tggagttttacatgggatatacaataattt----acggggttattct--tttcagGCAAGGCCAATTCTTAGAGATAAGGACAGCTTGGAAGAACTTGCTGATCCAAGGCTTGGGGGAAGGTACCCAAAGGAAGATTTTGTACGTGTTTGCACTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37187446|gb|CF606799.1|CF606799EST: GACAGGAGAACCTTGTTACTTGG GCCAGACCAATTCTTAGAGACAAGGATCGGCTTGAAGAGCTAGCTGATGAA
genomic: GACAGGAGAACCTTGTTACTTGGgttagtaata ... ttgctttcagGCCAGACCAATTCTTAGAGACAAGGATCGGCTTGAAGAGCTAGCTGATGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgaaaacgtacattctgggcaaaatagttagacaactggactgtcttgctttcagGCCAGACCAATTCTTAGAGACAAGGATCGGCTTGAAGAGCTAGCTGATGAAAGGCTTGCTGGAAAGTATCCAAAGGAAGATTTTGTACGAGTTTGCACAA
tcttgctttc CT-rich tract
aaaatagtta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttagtaatatttctaatttatttgatctttaccattcatggttccttgtgcttttctttctaataaattacccaagcatttctttccaatgaaaacgtacattctgggcaaaatagttagacaactggactgtcttgctttcagGCCAGACCAATTCTTAGAGACAAGGATCGGCTTGAAGAGCTAGCTGATGAAAGGCTTGCTGGAAAGTATCCAAAGGAAGATTTTGTACGAGTTTGCACAA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA