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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtattataattcttgtagataagtttatttcccccctttagttgtgtagatatttcttcatcagctgtctgtgagatctgaattttatattattatgattttgtagTCACCCATCTCCCTCAGTCCTCATTCCTGCCCTTCGCACAGTTGGAAATATTGTTACTGGGGATGATATCCAAACTCAG

Basic information

species Vitis vinifera
transcript Vv07s0005g01100.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g01100.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: PP1S165_51V6.1 (Physcomitrella patens), 3'ss of exon 6
gtgagtattataattcttgtagataagtttatttcccccctttagttgtgtagatatttcttca-tcagctgtctgtgagatctgaattttatattattatgattttgtagTCACCCATCTCCCTCAGTCCTCATTCCTGCCCTTCGCACAGTTGGAAATATTGTTACTGGGGATGATATCCAAACTCAG
|| || ||| | |||     | | ||   |  |    |  | |||  || |   || |     | ||   ||  |        | |      | ||  |   || | | || ||||| || |||||||| ||||| |||||| | || ||||| ||||||||||||||||| || ||| | ||||| |||
gtaagcattctcattaaaccatagaaccctgat----ctttctagccgtctccttagtgtggaagtctcttgagtacacagattaacccggttgtttcttaaatctagcagCCACCCTTCACCCTCAGTGCTCATCCCTGCCTTGCGAACAGTCGGAAATATTGTTACTGGCGACGATCTTCAAACACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110397066|gb|EC962784.1|EC962784
EST:     ATTGAAGCCGGTGTTTGTCCCCGACTTGTTGAACTGTTACT                         TCACCCATCTCCCTCAGTCCTCATTCCTGCCCTTCGCACAGTTGGAAATAT
genomic: ATTGAAGCCGGTGTTTGTCCCCGACTTGTTGAACTGTTACTgtgagtatta ... gattttgtagTCACCCATCTCCCTCAGTCCTCATTCCTGCCCTTCGCACAGTTGGAAATAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttcttcatcagctgtctgtgagatctgaattttatattattatgattttgtagTCACCCATCTCCCTCAGTCCTCATTCCTGCCCTTCGCACAGTTGGAAATATTGTTACTGGGGATGATATCCAAACTCAG
                        atctgaattttatatt  TA-rich tract