1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...ggcagcctatgtaatatatttaatataatgaggactactaggtgacacaatataaaaatcattcttgcctctatgactttgcttattttgttttttccagTCTATTGAGTTCAAAGATATTATTAAAATTGGGCGTACTCACACTCAAGATGCAACGCCTTTGACTTTGGGCCAAGAGTTTAGTGGGTATTATACACAA
species | Vitis vinifera |
transcript | Vv07s0005g00880.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAAGATTAATACCAAGTTTGAAGCATTTAGAAACTGCACTACATTCGAAG TCTATTGAGTTCAAAGATATTATTAAAATTGGGCGTACTCACACTCAAGATEST: gi|110713618|gb|EE089697.1|EE089697
genomic: CAAGATTAATACCAAGTTTGAAGCATTTAGAAACTGCACTACATTCGAAGgttggataat ... ttttttccagTCTATTGAGTTCAAAGATATTATTAAAATTGGGCGTACTCACACTCAAGAT
EST: CAAGATTAATACCAAGTTTGAAGCATTTAGAAACTGCACTACATTCAAAG TCTATTGAGTTCAAAGATATTATTAAAATTGGGCGTACTCACACTCAAGATEST: gi|352773939|gb|FQ473071.1|FQ473071
genomic: CAAGATTAATACCAAGTTTGAAGCATTTAGAAACTGCACTACATTCGAAGgttggataat ... ttttttccagTCTATTGAGTTCAAAGATATTATTAAAATTGGGCGTACTCACACTCAAGAT
EST: CAAGATTAATACCAAGTTTGAAGCATTTAGAAACTGCACTACATTCGAAG TCTATTGAGTTCAAAGATATTATTAAAAATTGGGCGTACCCACACTCAAGAEST: gi|33402485|gb|CF208112.1|CF208112
genomic: CAAGATTAATACCAAGTTTGAAGCATTTAGAAACTGCACTACATTCGAAGgttggataat ... ttttttccagTCTATTGAGTTCAAAGATATTATTAAAA-TTGGGCGTACTCACACTCAAGA
EST: CAAGATTAATACCAAGTTTGAAGCATTTAGAAACTGCACTACATTCAAAG TCTATTGAGTTCAAAGATATTATTAAAATTGGGCGTACTCACACTCAAGATEST: gi|351045827|gb|FQ441012.1|FQ441012
genomic: CAAGATTAATACCAAGTTTGAAGCATTTAGAAACTGCACTACATTCGAAGgttggataat ... ttttttccagTCTATTGAGTTCAAAGATATTATTAAAATTGGGCGTACTCACACTCAAGAT
EST: CAAGATTAATACCAAGTTTGAAGCATTTAGAAACTGCACTACATTCGAAG TCTATTGAGTTCAAAGATATTATTAAAATTGGGCGTACTCACACTCAAGAT
genomic: CAAGATTAATACCAAGTTTGAAGCATTTAGAAACTGCACTACATTCGAAGgttggataat ... ttttttccagTCTATTGAGTTCAAAGATATTATTAAAATTGGGCGTACTCACACTCAAGAT
cacaatataaaaatcattcttgcctctatgactttgcttattttgttttttccagTCTATTGAGTTCAAAGATATTATTAAAATTGGGCGTACTCACACTCAAGATGCAACGCCTTTGACTTTGGGCCAAGAGTTTAGTGGGTATTATACACAA
ctttgcttattttgtt CT-rich tract
tataaaaatcattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcagcctatgtaatatatttaatataatgaggactactaggtgacacaatataaaaatcattcttgcctctatgactttgcttattttgttttttccagTCTATTGAGTTCAAAGATATTATTAAAATTGGGCGTACTCACACTCAAGATGCAACGCCTTTGACTTTGGGCCAAGAGTTTAGTGGGTATTATACACAA
ggcagcc
- - - - - - - - - - - - - - - - - - - - - -gacacaa
- - - - - - - - - - - - - - - - - - - - - - - - - -ataaaaa