Sequence
atgc intronic sequence ATGC exonic sequence...attaaatcatttagataaatgttttttgcctgtagtgctgcatatttaagtaatgaatcttggtggttaatgctaaatgtgacattgtgtattgctacagTGATACAACAAAGAACGTTTTGATTACTTCCACATACATACATTTGATGCATATTAAATTTGCAAAGTATACCATGGACCTCTCTTCCGTTTGTCCGCGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g00200.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA02G17400.1 (Glycine max), 3'ss of exon 3
-------------------------------------------------------------------------------------attaaatcatttagataaatgttttttgcctgtagtgct-----gcatatttaagtaatgaatctt-ggtggttaatg-----ctaaatgtgacattgtgtattgctacagTGATACAACAAAGAACGTTTTGATTACTTCCACATACATACATTTGATGCATATTAAATTTGCAAAGTATACCATGGACCTCTCTTCCGTTTGTCCGCGA
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gttcaaacaagtacttcttattaatttatctcttgattatgctacctgaactatgctaccttgattatggtcacaaatagctacatttatattctctgttgcaatattgttggcttgaatagcttgtagttactgttatgagatagataagagataatttatagcaacttgattatgatgttttgtataattgcagTGATACAACAAAGAACGTTTTGATTGCTTCTACATTTATTCATTTGAAGTGCAAAGGCTTTGGAAAATATGCTTCAGACCTCCCATCAGTGTCTCCACGA
upper sequence: Vv07s0005g00200.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA02G17410.1 (Glycine max), 3'ss of exon 2
---------------------------------------------------at-taaatcat--ttagataaatgttttttgcctgtag--tgctgcat--atttaagtaatgaatcttggtggttaatgctaaatgtgacattgtgtattgctacagTGATACAACAAAGAACGTTTTGATTACTTCCACATACATACATTTGATGCATATTAAATTTGCAAAGTATACCATGGACCTCTCTTCCGTTTGTCCGCGA
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gtgcatacaattacttattattttatctcttgattatgctgcctgaactacatgtgaactatagctatgttgatattctttgctggtattttgctgggttgagatagaaaagagataattatggctact--tgcttatgatgttttgtatta-tacagTGATACAACAAAGAATGTTTTGATTGCTTCTACATTTATTCATTTGAAGTGCATTGGCTTTGGAAAATATGCTTCTGACCTCCCATCAGTGTCTCCACGA
upper sequence: Vv07s0005g00200.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA10G02400.1 (Glycine max), 3'ss of exon 6
--------------------------------------------------------attaaat-catttagataaatgttttttgcctgtagtgctgcatatttaagta-atgaatcttggtggttaa--tgctaaatgtgacattgtgtattgctacagTGATACAACAAAGAACGTTTTGATTACTTCCACATACATACATTTGATGCATATTAAATTTGCAAAGTATACCATGGACCTCTCTTCCGTTTGTCCGCGA
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gtgaataccattacttgttattgttttatctcttgattatgctgcctgaactacatgtgaactgtagctatgttgatattctttgctgctattttgctgggttgagatagataagagttaatttatggcttcttgcttatgatgttttgtatta-tacagTGATACAACAAAGAGCGTTTTGATTGCTTCTACATTTATTCATTTGAAGTGCATGGGCTTTGGAAAATATGCTTCTGACCTCTCATCAGTGTCTCCACGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttaagtaatgaatcttggtggttaatgctaaatgtgacattgtgtattgctacagTGATACAACAAAGAACGTTTTGATTACTTCCACATACATACATTTGATGCATATTAAATTTGCAAAGTATACCATGGACCTCTCTTCCGTTTGTCCGCGA
tgctaaa putative branch site (score: 2)
taatgaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attaaatcatttagataaatgttttttgcctgtagtgctgcatatttaagtaatgaatcttggtggttaatgctaaatgtgacattgtgtattgctacagTGATACAACAAAGAACGTTTTGATTACTTCCACATACATACATTTGATGCATATTAAATTTGCAAAGTATACCATGGACCTCTCTTCCGTTTGTCCGCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- -aaatcat
- - - - - - agataaa
- - - - - - - - - - - - - tgcctgt
- - - - - - - - - - - - - - - - - - -ctgcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtggtt