Sequence
atgc intronic sequence ATGC exonic sequencegtaatttctctcaactagttacatgttaggaaacatttagaaatttcatccattccatatggagagtgaattccaggatttttagtaatgacttgatctgtgggtgcagATCAAGCTATATGGGAAGAGAGGCGTATACAAGGATTCCAAGTTGCAGGAGCAAGGAGGAAAGATCTTTGAGAAAGATGGGATATTGTACAACTGTGCCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0080g00260.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA11G19070.1 (Glycine max), 3'ss of exon 7
----gtaattt-ctctcaactagttacatgttaggaaacatttagaaatttcatccattccatatggagagtgaattccaggatttttagtaatgacttgatctgtg-ggtg-cagATCAAGCTATATGGGAAGAGAGGCGTATACAAGGATTCCAAGTTGCAGGAGCAAGGAGGAAAGATCTTTGAGAAAGATGGGATATTGTACAACTGTGCCT
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gtaaaaaatttactctttcatacttttattttcttaatttcttaattaaaaataaaataacacatggagcttccttttatttgtgtttgatta-aatttggcctgtgtggtaacagCTCAAGCTTTATGGGAAGAGAGGGGTCTATAAAGATTCCAAGTTGCAGGAACAAGGTGGAAAGATATTTGAAAGAGATGGGATATTATACAACTGTGCCT
upper sequence: Vv06s0080g00260.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA12G09390.1 (Glycine max), 3'ss of exon 7
gtaatttctctcaactagttacatgttaggaaacatttagaaatttcatccattccatatggagagtgaattccaggatttttagtaatgacttgatctgtgggtgcagATCAAGCTATATGGGAAGAGAGGCGTATACAAGGATTCCAAGTTGCAGGAGCAAGGAGGAAAGATCTTTGAGAAAGATGGGATATTGTACAACTGTGCCT
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gta--tacaatttactattt-catactgttattttcttattaagaaataaaataacacatggagctcccttttatttgtgtttgatta-aatttggtctgtggtaacagCTCAAGCTTTATGGGAAGAGAGGAGTCTATAAAGATACCAAGTTGCAGGAACAAGGTGGAAAGATATTTGAAAGAGATGGGATACTATACAACTGTGCCT
upper sequence: Vv06s0080g00260.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT5G22470.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaatttctctcaactagttacatgttaggaaa-catttagaaatttcatccattccatatggagagtgaattccaggatttttagtaatgacttgatctgtgggtgcagATCAAGCTATATGGGAAGAGAGGCGTATACAAGGATTCCAAGTTGCAGGAGCAAGGAGGAAAGATCTTTGAGAAAGATGGGATATTGTACAACTGTGCCT
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----------------------gtattgattactcaattagtaatactaat--ttcaatatag---gttagcttcaaaatcttgatttgtgttttgatatttt----cagCTCAAAATGTATGGGAAAAGAGGAGTGTACATGGACACAAAACTTCAGGAGAGAGGAGGAAAGATCTTCGAGAAAGATGGACTCTTGTATAACTGTGCCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccatatggagagtgaattccaggatttttagtaatgacttgatctgtgggtgcagATCAAGCTATATGGGAAGAGAGGCGTATACAAGGATTCCAAGTTGCAGGAGCAAGGAGGAAAGATCTTTGAGAAAGATGGGATATTGTACAACTGTGCCT
acttgat putative branch site (score: 5)
atttttagtaatga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatttctctcaactagttacatgttaggaaacatttagaaatttcatccattccatatggagagtgaattccaggatttttagtaatgacttgatctgtgggtgcagATCAAGCTATATGGGAAGAGAGGCGTATACAAGGATTCCAAGTTGCAGGAGCAAGGAGGAAAGATCTTTGAGAAAGATGGGATATTGTACAACTGTGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG