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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaacatctatatcatttgcatattgtattgtttggttaaaaaggaatatgatctgattttcttgtgcgcatacacaacagGCCCAAAAAACTGCTGAGCTACTTCTTGATTTGAAGGTGAGCTGCATAATTAGCAGCCCTAAGATTGCCTCTGTTGAGACAGCCACAACCATCTCCAGA

Basic information

species Vitis vinifera
transcript Vv06s0061g01340.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g01340.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA12G09100.1 (Glycine max), 3'ss of exon 6
gtacaacatctatatcatttgcatattgtattgtttggttaaaaaggaatatgatctgattttcttgtgcgcatacacaacagGCCCAAAAAACTGCTGAGCTACTTCTTGATTTGAAGGTGAGCTGCATAATTAGCAGCCCTAAGATTGCCTCTGTTGAGACAGCCACAACCATCTCCAGA
||||  |||| | |||||  | |      ||   | ||   |||||  || | ||||||  || |     ||||  | ||||| |||| ||| |||| ||||||||||||||||| || ||||  | |||||||||||| ||||| |  || | ||||| ||||||||| | |||||||   
gtactgcatcca-atcatcagaa------ataagtgggc--aaaagttatttcatctgacctttt-----gcatgtataacagTCCCAGAAATCTGCAGAGCTACTTCTTGATTTAAAAGTGAATTCCATAATTAGCAGTCCTAACAAAGCTTGTGTTGGGACAGCCACGATCATCTCCCAG

upper sequence: Vv06s0061g01340.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA11G19400.1 (Glycine max), 3'ss of exon 6
gtacaacatctatatcatttgcatattgtattgtttggttaaaaaggaatatgatctgattttcttgtgcgcatacacaacagGCCCAAAAAACTGCTGAGCTACTTCTTGATTTGAAGGTGAGCTGCATAATTAGCAGCCCTAAGATTGCCTCTGTTGAGACAGCCACAACCATCTCCAGA
||||  |||| | |||||  | |      ||   | ||   |||||  || | ||||||  || |     ||||  | ||||| |||| ||| |||| |||||||||||||||||||| ||||  | |||||||||||| | ||| |  || | | | | ||||||||| | |||||||   
gtactgcatcca-atcatcagaa------ataaatgggc--aaaagttatttcatctgacctttt-----gcatgtataacagTCCCAGAAATCTGCAGAGCTACTTCTTGATTTGAAAGTGAATTCCATAATTAGCAGTCTTAACAAAGCTTGTATCGGGACAGCCACGATCATCTCCCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattgtttggttaaaaaggaatatgatctgattttcttgtgcgcatacacaacagGCCCAAAAAACTGCTGAGCTACTTCTTGATTTGAAGGTGAGCTGCATAATTAGCAGCCCTAAGATTGCCTCTGTTGAGACAGCCACAACCATCTCCAGA
                         atctgat  putative branch site (score: 4)
          ttaaaaaggaatat  TA-rich tract