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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttattgtttacaaatccacattttatcattgtgtcattgttgttgatttttgagcatatatcttgttatgccaactgtaccttctttgagtataatttgcctatattttggtgtcagGTTCCTTTGGGTCTGGCAATCACGTGGGCCACTGCTTTCCTTCTGACTGAGGCAGGAGTTTATAACTACAAAGGTTGTGATGTAAATGTACCAGCCTCTA

Basic information

species Vitis vinifera
transcript Vv06s0061g01310.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g01310.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G095611_T01 (Zea mays), 3'ss of exon 6
gtatgtttattgtttacaaatccacattttatcattgtgtcattgttgttgatttttga-gcatatatcttgttatgccaactgtaccttctttgagtataatttgcctatattttggtgtcagGTTCCTTTGGGTCTGGCAATCACGTGGGCCACTGCTTTCCTTCTGACTGAGGCAGGAGTTTATAACTACAAAGGTTGTGATGTAAATGTACCAGCCTCTA
||| | || |   |||  ||      || |    |||  | | ||| || ||| | ||  ||||     ||| ||||  |    ||  ||||         |  | |  ||  |      | |||||||| | ||  | | |||||| |||||   ||||||| |||| || |   | |||||||||| ||||||||||||||||| |||| | || ||||| |
gtaagattttctcttatgaa-----gttatgatgttgattgaatgt-gtggatctgtgctgcatgctggttgatatgagaggc-taatttct--------gaactactgatgctgcctctttagGTTCCTCTTGGATTAGGAATCACATGGGCTGTTGCTTTCGTTCTCACAGCAACTGGAGTTTATAGCTACAAAGGTTGTGATGCAAATATTCCTGCCTCAA

upper sequence: Vv06s0061g01310.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA11G19420.1 (Glycine max), 3'ss of exon 6
gtatgtttattgtttacaaatcca-cattttatcattgtgtcattgttgttgatttttgagcatatatcttgttatgccaactgtaccttctttgagtataatttgcctatattttggtgtcagGTTCCTTTGGGTCTGGCAATCACGTGGGCCACTGCTTTCCTTCTGACTGAGGCAGGAGTTTATAACTACAAAGGTTGTGATGTAAATGTACCAGCCTCTA
                 || |  | ||||  |  ||  |    |  |  |   |  ||||    | || ||||  ||  | |  |   ||||    || |  ||  ||||        ||  |||||||| ||||||||||||| || |||||   ||||||| | |||||||| ||||||||||| | ||||||||| |||||||||||| |||| ||||| |
---------------gtaagttgaacattccactatcttacgttactcttcagtagttgaaataaaattttgtggtgt-agcaatgatttct----gttttcttcaccta------actgctagGTTCCTCTGGGTCTGGCAATTACATGGGCATTTGCTTTCTTGCTGACTGAAGCAGGAGTTTACAGCTACAAAGGGTGTGATGTAAATATACCTGCCTCAA

upper sequence: Vv06s0061g01310.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA12G09060.1 (Glycine max), 3'ss of exon 6
gtatgtttattgtttacaaatcca-cattttatcattgtgtcattgttgttgatttttgagcatatatcttgttatgccaactgtaccttctttgagtataatttgcctatattttggtgtcagGTTCCTTTGGGTCTGGCAATCACGTGGGCCACTGCTTTCCTTCTGACTGAGGCAGGAGTTTATAACTACAAAGGTTGTGATGTAAATGTACCAGCCTCTA
                 || |  | ||||  |  ||  |  ||||  | || | |  |    ||| |  ||||  ||       |   |||| |    || |  |  ||          |  |||||||| ||||||||||||| || |||||   ||||||| | |||||||| ||||||||||| | ||||||||| ||||||| |||| ||||  |||| |
---------------gtaagttgaacattacaatatctta-cattactcttcagtagttgaaataaaatttgtggtgtagcaaatgatttctgttttcatcacctaact----------gctagGTTCCTCTGGGTCTGGCAATTACATGGGCATTTGCTTTCATGCTGACTGAAGCAGGAGTTTACAGCTACAAAGGGTGTGATGCAAATATACCTTCCTCAA

upper sequence: Vv06s0061g01310.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA12G30670.1 (Glycine max), 3'ss of exon 6
gtatgtttattgtttacaaatccacattttatcattgtgtcattgttgttgatttttgagcatatatcttgttatgccaactgtaccttctttgagtataatttgcctatattttggtgtcagGTTCCTTTGGGTCTGGCAATCACGTGGGCCACTGCTTTCCTTCTGACTGAGGCAGGAGTTTATAACTACAAAGGTTGTGATGTAAATGTACCAGCCTCTA
||| ||||| |||| ||||       | | ||   || || ||  |  |     ||||| ||||  |  | || ||  || || |  || | |        ||||| |  |  |   || ||||||||||||||||||||||| ||||||||   ||||||| |  ||||||| || ||||| || ||||||||||| |||||  ||||| |||| ||||| |
gtaagtttaatgtt-acaa-------tatcatt-ctgagttatactcttcagaatttga-cataattgattttctgttaagtg-atgttttct--------tttgctt-cacctaactgccagGTTCCTTTGGGTCTGGCAATTACGTGGGCTGTTGCTTTCTTGTTGACTGAAGCTGGAGTCTACAACTACAAAGGATGTGACATAAATATACCTGCCTCGA

upper sequence: Vv06s0061g01310.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA17G05280.1 (Glycine max), 3'ss of exon 6
gtatgtttattgtttacaaatccacattttatcattgtgtcattgttgttgatttttgagcatatatcttgttatgccaactgtaccttctttgagtataatttgcctatattttggtgtcagGTTCCTTTGGGTCTGGCAATCACGTGGGCCACTGCTTTCCTTCTGACTGAGGCAGGAGTTTATAACTACAAAGGTTGTGATGTAAATGTACCAGCCTCTA
||| ||| | |||| ||||          |||  || ||   ||  | || |   |||| ||||  |  | || ||   | ||    || |||        ||  ||||        || ||||||||||||||||||||||| || |||||   ||||||| | |||||||| || ||||  || ||||||||||| |||||  ||||| |||| ||||| |
gtaagttaaatgtt-acaa----------tattcttctga-gttactcttcagaattgaacataattgattttctgtttagtgatttttttttc-------ttctccta------actgccagGTTCCTTTGGGTCTGGCAATTACATGGGCAGTTGCTTTCTTGCTGACTGAAGCTGGAGCCTACAACTACAAAGGGTGTGACATAAATATACCTGCCTCAA

upper sequence: Vv06s0061g01310.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT2G27810.3 (Arabidopsis thaliana), 3'ss of exon 6
--------------------------------------gtatgtttattgtttacaaatc---cacattttatcattgtgtcattgttgttgatttttgagcatatatcttgttatgccaactgtacctt---ctttgagtataatttgcctatattttggtgtcagGTTCCTTTGGGTCTGGCAATCACGTGGGCCACTGCTTTCCTTCTGACTGAGGCAGGAGTTTATAACTACAAAGGTTGTGATGTAAATGTACCAGCCTCTA
                                      |||| |        ||  | ||    |   |||| |    |   ||      ||||  |   | |   ||||     | |||||| ||| |    |||||| |    |      |  | ||  || |||||||| ||| |||| |||||||| |||||  |||| |||||| | |||||  |||||| ||| | |||||||||||||||   ||| || || | ||| |
gtaagtaggttcatgtctgcttttccttagctctttcggtatataggaaaagtaagactcgagtaatctttacctcaattgaatcaactctgataatgtggtaatcatctgacatttccaactctacatgtgactttgactgacctaatttaacttcttactgacagGTTCCATTGAGTCTTGCAATCACTTGGGCTGCTGCATTCCTTTTAACTGAAACAGGAGCTTACACCTACAAAGGTTGTGACCCAAACGTTCCTGTCTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttatgccaactgtaccttctttgagtataatttgcctatattttggtgtcagGTTCCTTTGGGTCTGGCAATCACGTGGGCCACTGCTTTCCTTCTGACTGAGGCAGGAGTTTATAACTACAAAGGTTGTGATGTAAATGTACCAGCCTCTA
                      tttgagtataattt  TA-rich tract