1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttagtttagtttatatctttgtgatagaaatgtaactgagaatgtaattaagataatgggactaagttgttaatcgataatcttgcagAAAGTGAGGTTTTGGAAGAAGGTATATGTGATCTACAGCTTCTTCTTAGTGAGGAAGATCGTGGCCCATATGGTCACCTTTTGCCTTTACTGTGTGGTAC
species | Vitis vinifera |
transcript | Vv06s0061g01230.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTCCAGCCAATTTGTTCAGAAAAATGGTGATGGAGATTGTAAGAAACAAG AAAGTGAGGTTTTGGAAGAAGGTATATGTGATCTACAGCTTCTTCTTAGTGEST: gi|110719707|gb|EE095069.1|EE095069
genomic: GTCCAGCCAATTTGTTCAGAAAAATGGTGATGGAGATTGTAAGAAACAAGgttagtttag ... aatcttgcagAAAGTGAGGTTTTGGAAGAAGGTATATGTGATCTACAGCTTCTTCTTAGTG
EST: GTCCAGCCAATTTGTTCAGAAAAATGGTGATGGAGATTGTAAGAAACAAG AAAGTGAGGTTTTGGAAGAAGGTATATGTGATCTACAGCTTCTTCTTAGTGEST: gi|34543478|gb|CF511710.1|CF511710
genomic: GTCCAGCCAATTTGTTCAGAAAAATGGTGATGGAGATTGTAAGAAACAAGgttagtttag ... aatcttgcagAAAGTGAGGTTTTGGAAGAAGGTATATGTGATCTACAGCTTCTTCTTAGTG
EST: GTCCAGCCAATTTGTTCAGAAAAATGGTGATGGAGATTGTAAGAAACAAG AAAGTGAGGTTTTGGAAGAAGGTATATGTGATCTACAGCTTCTTCTTAGTGEST: gi|34543136|gb|CF511368.1|CF511368
genomic: GTCCAGCCAATTTGTTCAGAAAAATGGTGATGGAGATTGTAAGAAACAAGgttagtttag ... aatcttgcagAAAGTGAGGTTTTGGAAGAAGGTATATGTGATCTACAGCTTCTTCTTAGTG
EST: CAGCCAATTTGTTCAGAAAAATGGTGATGGAGATTGTAAGAAACAAG AAAGTGAGGTTTTGGAAGAAGGTATATGTGATCTACAGCTTCTTCTTAGTGEST: gi|34543219|gb|CF511451.1|CF511451
genomic: CAGCCAATTTGTTCAGAAAAATGGTGATGGAGATTGTAAGAAACAAGgttagtttag ... aatcttgcagAAAGTGAGGTTTTGGAAGAAGGTATATGTGATCTACAGCTTCTTCTTAGTG
EST: GTCCAGCCAATTTGTTCAGAAAAATGGTGATGGAGATTGTAAGAAACAAG AAAGTGAGGTTTTGGAAGAAGGTATATGTGATCTACAGCTTCTTCTTAGTG
genomic: GTCCAGCCAATTTGTTCAGAAAAATGGTGATGGAGATTGTAAGAAACAAGgttagtttag ... aatcttgcagAAAGTGAGGTTTTGGAAGAAGGTATATGTGATCTACAGCTTCTTCTTAGTG
aactgagaatgtaattaagataatgggactaagttgttaatcgataatcttgcagAAAGTGAGGTTTTGGAAGAAGGTATATGTGATCTACAGCTTCTTCTTAGTGAGGAAGATCGTGGCCCATATGGTCACCTTTTGCCTTTACTGTGTGGTAC
tgttaat putative branch site (score: 3)
aatgtaattaagataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtttagtttatatctttgtgatagaaatgtaactgagaatgtaattaagataatgggactaagttgttaatcgataatcttgcagAAAGTGAGGTTTTGGAAGAAGGTATATGTGATCTACAGCTTCTTCTTAGTGAGGAAGATCGTGGCCCATATGGTCACCTTTTGCCTTTACTGTGTGGTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA