1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacagaaacctggttttatttcctcatttcaatcgtggatagcctgataaagttgttactcatttgacattaatactctacagGTATATGTTCCTGGTTGACAAGTTTGGTAGAATAAGATGGCAAGGTTTTGGGTTGGCAGCAGAAGAGGAGTTAGCATCACTTCTGTCTTGCACAACACTT
species | Vitis vinifera |
transcript | Vv06s0061g01020.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GACCATTACTACTTCAGAAAAGAGCTTAAAATATTGAACCTTCTAACTGG GTATATGTTCCTGGTTGACAAGTTTGGTAGAATAAGATGGCAAGGTTTTGGEST: gi|110429540|gb|EC996035.1|EC996035
genomic: GACCATTACTACTTCAGAAAAGAGCTTAAAATATTGAACCTTCTAACTGGgtacagaaac ... tactctacagGTATATGTTCCTGGTTGACAAGTTTGGTAGAATAAGATGGCAAGGTTTTGG
EST: GACCATTACTACTTCAGAAAAGAGCTTAAAATATTGAACCTTCTAACTGG GTATATGTTCCTGGTTGACAAGTTTGGTAGAATAAGATGGCAAGGTTTTGGEST: gi|110416998|gb|EC983018.1|EC983018
genomic: GACCATTACTACTTCAGAAAAGAGCTTAAAATATTGAACCTTCTAACTGGgtacagaaac ... tactctacagGTATATGTTCCTGGTTGACAAGTTTGGTAGAATAAGATGGCAAGGTTTTGG
EST: GACCATTACTACTTCAGAAAAGAGCTTAAAATATTGAACCTTCTAACTGG GTATATGTTCCTGGTTGACAAGTTTGGTAGAATAAGATGGCAAGGTTTTGG
genomic: GACCATTACTACTTCAGAAAAGAGCTTAAAATATTGAACCTTCTAACTGGgtacagaaac ... tactctacagGTATATGTTCCTGGTTGACAAGTTTGGTAGAATAAGATGGCAAGGTTTTGG
tcaatcgtggatagcctgataaagttgttactcatttgacattaatactctacagGTATATGTTCCTGGTTGACAAGTTTGGTAGAATAAGATGGCAAGGTTTTGGGTTGGCAGCAGAAGAGGAGTTAGCATCACTTCTGTCTTGCACAACACTT
cattaat putative branch site (score: 3)
atttgacattaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacagaaacctggttttatttcctcatttcaatcgtggatagcctgataaagttgttactcatttgacattaatactctacagGTATATGTTCCTGGTTGACAAGTTTGGTAGAATAAGATGGCAAGGTTTTGGGTTGGCAGCAGAAGAGGAGTTAGCATCACTTCTGTCTTGCACAACACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG