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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaacagaactgccccacattgagatccattttggataactttaagctcaaaatattcatttaatttttgcagGAGGAAGCAATCGCTGAGGGTGCTGATGATGAGGAAGAACTAGAAGAAATAAGGGCCAGACTTGCCAAAGTTAGGTCCTAGTTTAATTCTGACTCTACCC

Basic information

species Vitis vinifera
transcript Vv06s0061g00540.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g00540.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA12G08510.1 (Glycine max), 3'ss of exon 5
------gtatgtaacagaactgccccaca--ttgagatccattttggataactttaagctcaaaatattcat----ttaatttttgcagGAGGAAGCAATCGCTGAGGGTGCTGATGATGAGGAAGAACTAGAAGAAATAAGGGCCAGACTTGCCAAAGTTAGGTCCTAGTTTAATTCTGACTCTACCC
      |||  |     |  | ||  | |      | ||  | |||  | ||  | | | | || |||  |     ||| | ||||||||| || || || |||||||||| |||||||||||||||| | ||||||||||||||| ||||||| |||||||| || ||    | ||   | |||  | 
gtatgcgtagtttgttcattttccttataaacatggctctttcttgcctcacacttaacaccaattatggaatgcattattatttgcagGAAGAGGCTATAGCTGAGGGTGTTGATGATGAGGAAGAAATGGAAGAAATAAGGGCCCGACTTGCTAAAGTTAGATCGTAAACAAGTTTCTAATCTCGCA

upper sequence: Vv06s0061g00540.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA11G19930.1 (Glycine max), 3'ss of exon 6
------gtatgtaacagaactgccccacattgagatccattttggataactttaagctcaaaatattca----tttaatttttgcagGAGGAAGCAATCGCTGAGGGTGCTGATGATGAGGAAGAACTAGAAGAAATAAGGGCCAGACTTGCCAAAGTTAGGTCCTAGTTTAATTCTGACTCTACCC
      | |  |     |  | ||  | |   |   |  |||       | || | | | |  |||| |     ||| | ||||||||| || || || |||||||||| ||||||||| |||||| | ||||||||||||||||||||||| |||||||| || |                     
gtatgtgcagtttgttcattttccttataaacatggctctttcttgcctcatttaacaccagttattgaatacattattatttgcagGAAGAGGCTATTGCTGAGGGTGTTGATGATGAAGAAGAAATGGAAGAAATAAGGGCCAGACTTGCTAAAGTTAGATCATGA-------------------

upper sequence: Vv06s0061g00540.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA06G23570.2 (Glycine max), 3'ss of exon 6
------gtatgtaacagaactgccccaca--ttgagatccattttggataactttaagctcaaaatattcatttaatt----tttgcagGAGGAAGCAATCGCTGAGGGTGCTGATGATGAGGAAGAACTAGAAGAAATAAGGGCCAGACTTGCCAAAGTTAGGTCCTAGTTTAATT-CTGACTCTACCC
      | |  ||    |  | ||  | |      | ||  | |||  | ||  | | | | || |||  | || | |    ||||||||| || || || |||||||||| ||||||||| |||||| | ||||||||||||||| | ||||| |||||| | || || |  | || || | |   |  
gttcgcgcaattagtccattttccttataaacaaggctctgtcttgcctcacacttaacaccaattatggaattcaatattatttgcagGAAGATGCTATAGCTGAGGGTGTTGATGATGAAGAAGAAATGGAAGAAATAAGGGCCCGGCTTGCTAAAGTTCGATCATAATCAAGTTTCTAATTTCGCA-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110718482|gb|EE095363.1|EE095363
EST:     TCAGGAAGGAAAGGGTAAAGCAACCTGCCCAGACAGCAGAAGCTGATGAT                         GAGGAAGNCA-TCGCTGAGGGTGCTGATGATGAGGAAGAACTATGA-GAAA
genomic: TCAGGAAGGAAAGGGTAAAGCAACCTGCCCAGACAGCAGAAGCTGATGATgtatgtaaca ... atttttgcagGAGGAAG-CAATCGCTGAGGGTGCTGATGATGAGGAAGAACTA-GAAGAAA
EST: gi|26257618|gb|CA808681.1|CA808681
EST:     CAGGAAGGAAAGGGTAAAAGCAACCTGCCCAGACAGCAGAAGCTGATGAT                         GAGGAAGCAATCGCTGAGGGTGCTGGATGATGAGGAAGAACTAGAAGAAAT
genomic: CAGGAAGGAAAGGGTAAA-GCAACCTGCCCAGACAGCAGAAGCTGATGATgtatgtaaca ... atttttgcagGAGGAAGCAATCGCTGAGGGTGCTG-ATGATGAGGAAGAACTAGAAGAAAT
EST: gi|110400103|gb|EC966646.1|EC966646
EST:     TCAGGAAGGAAAGGGTAAAGCAACCTGCCCAGACAGCAGAAGCTGATGAT                         GAGGAAGCAATCGCTGAGGGTGCTGATGATGAGGAAGAACTAGAAGAAATA
genomic: TCAGGAAGGAAAGGGTAAAGCAACCTGCCCAGACAGCAGAAGCTGATGATgtatgtaaca ... atttttgcagGAGGAAGCAATCGCTGAGGGTGCTGATGATGAGGAAGAACTAGAAGAAATA
EST: gi|110702376|gb|EE081020.1|EE081020
EST:     TCAGGAAGGAAAGGGTAAAGCAACCTGCCCAGACAGCAGAAGCTGATGAT                         GAGGAAGCAATCGCTGAGGGTGCTGATGATGAGGAAGAACTAGAAGAAATA
genomic: TCAGGAAGGAAAGGGTAAAGCAACCTGCCCAGACAGCAGAAGCTGATGATgtatgtaaca ... atttttgcagGAGGAAGCAATCGCTGAGGGTGCTGATGATGAGGAAGAACTAGAAGAAATA
EST: gi|351031409|gb|FQ445434.1|FQ445434
EST:     TCAGGAAGGAAAGGGTAAAGCAACCTGCCCAGACAGCAGAAGCTGATGAT                         GAGGAAGCAATCGCTGAGGGTGCTGATGATGAGGAAGAACTAANAAGAA-T
genomic: TCAGGAAGGAAAGGGTAAAGCAACCTGCCCAGACAGCAGAAGCTGATGATgtatgtaaca ... atttttgcagGAGGAAGCAATCGCTGAGGGTGCTGATGATGAGGAAGAACTAG-AAGAAAT
EST: gi|110702630|gb|EE078767.1|EE078767
EST:     TCAGGAAGGAAAGGGTAAAGCAACCTGCCCAGACAGCAGAAGCTGATGAT                         GANGAAGCAATCGCTGAAGGTGCTGATGATGANGAANAAACTAGA-GAAAT
genomic: TCAGGAAGGAAAGGGTAAAGCAACCTGCCCAGACAGCAGAAGCTGATGATgtatgtaaca ... atttttgcagGAGGAAGCAATCGCTGAGGGTGCTGATGATGAGGAAGAA-CTAGAAGAAAT
EST: gi|32456398|gb|CD797572.1|CD797572
EST:     TCAGGAAGGAAAGGGTAAAGCAACCTGCCCAGACAGCAGAAGCTGATGAT                         GAGGAAGCAATCGCTGAGGGTGCTGATGATGAGGAAGAACTAGAAGAAATA
genomic: TCAGGAAGGAAAGGGTAAAGCAACCTGCCCAGACAGCAGAAGCTGATGATgtatgtaaca ... atttttgcagGAGGAAGCAATCGCTGAGGGTGCTGATGATGAGGAAGAACTAGAAGAAATA
EST: gi|110722756|gb|EE099290.1|EE099290
EST:     TCAGGAAGGAAAGGGTAAAGCAACCTGCCCAGACAGCAGAAACTGATGAT                         GAGGAAACAATCGCTGAAGGTGCTGAAGATGAGGAANAACTAAAA-ATAAT
genomic: TCAGGAAGGAAAGGGTAAAGCAACCTGCCCAGACAGCAGAAGCTGATGATgtatgtaaca ... atttttgcagGAGGAAGCAATCGCTGAGGGTGCTGATGATGAGGAAGAACTAGAAGA-AAT
EST: gi|110362725|gb|EC926275.1|EC926275
EST:     TCAGGAAGGAAAGGGTAAAGCAACCTGCCCAGACAGCAGAAGCTGATGAT                         GAGGAAGCAATCGCTGAGGGTGCTGATGATGAGGAAGAACTAGAAGAAATA
genomic: TCAGGAAGGAAAGGGTAAAGCAACCTGCCCAGACAGCAGAAGCTGATGATgtatgtaaca ... atttttgcagGAGGAAGCAATCGCTGAGGGTGCTGATGATGAGGAAGAACTAGAAGAAATA
EST: gi|351014990|gb|FQ444279.1|FQ444279
EST:     TCAGGAAAGAAAGGGTAAAGCAACCTGCCCAGACAGCAGAAGCTGATGAT                         GAAGAAGCAATCGCTGAGGGTGCTGATGATGAGGAAGAACTAAAAGA
genomic: TCAGGAAGGAAAGGGTAAAGCAACCTGCCCAGACAGCAGAAGCTGATGATgtatgtaaca ... atttttgcagGAGGAAGCAATCGCTGAGGGTGCTGATGATGAGGAAGAACTAGAAGA
EST: gi|110396776|gb|EC962475.1|EC962475
EST:     TCAGGAAGGAAAGGGTAAAGCAACCTGCCCAGACAGCAGAAGCTGATGAT                         GAGGAAGCAATCGCTGAGGGTGCTGATGATGAGGAAGAACTAGAAGAAATA
genomic: TCAGGAAGGAAAGGGTAAAGCAACCTGCCCAGACAGCAGAAGCTGATGATgtatgtaaca ... atttttgcagGAGGAAGCAATCGCTGAGGGTGCTGATGATGAGGAAGAACTAGAAGAAATA
EST: gi|110382147|gb|EC938617.1|EC938617
EST:     TCAGGAAGGAAAGGGTAAAGCAACCTGCCCAGACAGCAGAAGCTGATGAT                         GAGGAAGCAATCGCTGAGGGTGCTGATGATGAGGAAGAACTAGAAGAAATA
genomic: TCAGGAAGGAAAGGGTAAAGCAACCTGCCCAGACAGCAGAAGCTGATGATgtatgtaaca ... atttttgcagGAGGAAGCAATCGCTGAGGGTGCTGATGATGAGGAAGAACTAGAAGAAATA
EST: gi|26257678|gb|CA808741.1|CA808741
EST:     TCAGGAAGGAAAGGGTAAAGCAACCTGCCCAGACAGCAGAAGCTGATGAT                         GAGGAAGCAATCGCTGAGGGTGCTGATGATGAGGAAGAACTAGAAGAAATA
genomic: TCAGGAAGGAAAGGGTAAAGCAACCTGCCCAGACAGCAGAAGCTGATGATgtatgtaaca ... atttttgcagGAGGAAGCAATCGCTGAGGGTGCTGATGATGAGGAAGAACTAGAAGAAATA
EST: gi|110714302|gb|EE091055.1|EE091055
EST:     TCAGGAAGGAAAGGGTAAAGCAACCTGCCCAGACAGCAGAAGCTGATGAT                         GAGGAAGCAATCGCTGAGGGTGCTGATGATGAGGAAGAACTAGAAGAAATA
genomic: TCAGGAAGGAAAGGGTAAAGCAACCTGCCCAGACAGCAGAAGCTGATGATgtatgtaaca ... atttttgcagGAGGAAGCAATCGCTGAGGGTGCTGATGATGAGGAAGAACTAGAAGAAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgagatccattttggataactttaagctcaaaatattcatttaatttttgcagGAGGAAGCAATCGCTGAGGGTGCTGATGATGAGGAAGAACTAGAAGAAATAAGGGCCAGACTTGCCAAAGTTAGGTCCTAGTTTAATTCTGACTCTACCC
                                              tttttgc  CT-rich tract
                 ataactttaagctcaa  TA-rich tract