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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagttcaattacttgcccttgtctcttcgatgttccagtgaacaaatcaagattttgaggcttttgtttcagGGTTTTGAGAAAATGATATCAGGGATGTACTTGGGTGACATTGTGAGGAGAGTTATTCTCAGAATGTCACAGGAGTCAGACATTTTTGGACCTGTTTCTT

Basic information

species Vitis vinifera
transcript Vv06s0061g00040.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os01g71320.1 (Oryza sativa), 3'ss of exon 6
------------gtacagttcaattacttgcccttgtctcttcgatgttccagtgaacaaatcaagattttg-aggcttttgtttcagGGTTTTGAGAAAATGATATCAGGGATGTACTTGGGTGACATTGTGAGGAGAGTTATTCTCAGAATGTCACAGGAGTCAGACATTTTTGGACCTGTTTCTT
            ||| | |||||||| |    || || ||||   ||||   ||  |  | | || | |||| |      || ||||||| |||||||||||||||||||| |||||  | || || ||||  ||    ||  |||  |||||| | ||||| |||||  |||||||   || | || 
gtagcaacctgggtaaaattcaattatt----ctggtatctt--gtgttgtggttta-gactgaacactttgtactaccatgattcagGGCTTTGAGAAAATGATATCAGGAATGTATCTTGGGGAAATTGCAAGATTGGTATTTCATAGAATGGCCCAGGAATCAGATGTTTTTGGTGATGCTGCTG

upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA11G10130.1 (Glycine max), 3'ss of exon 6
gtacagttcaattacttgcccttgtctcttcgatgttccag-tgaacaaatcaagattttgaggcttttgtttcagGGTTTTGAGAAAATGATATCAGGGATGTACTTGGGTGACATTGTGAGGAGAGTTATTCTCAGAATGTCACAGGAGTCAGACATTTTTGGACCTGTTTCTT
||   ||||  || ||  |   |     | |    |||  | |||   ||   ||||||||    ||||| |  ||||||||||||||||||||||||| |||||  | |||||||| ||||||||||| ||||| || ||||  |  |||||||| || ||||||||| ||||||
gttaggttctgttgctcacgaatccagttgcttgattcaggatgactcaaatcagattttggaaattttgatgtagGGTTTTGAGAAAATGATATCAGGAATGTATCTTGGTGACATCGTGAGGAGAGTCATTCTAAGGATGTTGCTAGAGTCAGATATGTTTGGACCTATTTCTT

upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA12G02450.1 (Glycine max), 3'ss of exon 6
gtacagttcaattacttgcccttgtctcttcgatgttccag-tgaacaaatcaagattttgaggcttttgtttcagGGTTTTGAGAAAATGATATCAGGGATGTACTTGGGTGACATTGTGAGGAGAGTTATTCTCAGAATGTCACAGGAGTCAGACATTTTTGGACCTGTTTCTT
||   ||||   | ||      |     | |    ||| || |||   ||   ||||||||    ||||| |  |||||||||||||||||||||| || |||||  | |||||||| ||||||||||| ||||| || ||||| |  |||||||| ||  |||||||| ||||||
gttaggttctgctgctcatgaatcctgttgcttgattcaagatgactcaaatcagattttgctaattttgatgtagGGTTTTGAGAAAATGATATCTGGAATGTATCTTGGTGACATCGTGAGGAGAGTCATTCTAAGGATGTCGCTAGAGTCAGATATGCTTGGACCTATTTCTT

upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA01G43650.1 (Glycine max), 3'ss of exon 6
gtacagttcaattacttgcccttgtctcttcgatgttccagtgaaca-aatcaagattttgaggcttttgtttcagGGTTTTGAGAAAATGATATCAGGGATGTACTTGGGTGACATTGTGAGGAGAGTTATTCTCAGAATGTCACAGGAGTCAGACATTTTTGGACCTGTTTCTT
||   ||||    | |||    || ||| | | || |  | |   ||  |  || ||||||  | ||| | | |||||||||||||||||||||||||| |||||  | |||||||||||||| ||||| ||||| |  ||||||   ||||| || || ||||||||  ||||| 
gtgaggttcggc-atttga---tgactcct-gttgcttgatttgtcatgactaaaattttggagatttgggtgcagGGTTTTGAGAAAATGATATCAGGAATGTATCTTGGTGACATTGTGAGAAGAGTCATTCTTAAGATGTCATTAGAGTCGGATATGTTTGGACCAATTTCTC

upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA11G01820.1 (Glycine max), 3'ss of exon 6
gtacagttcaattacttgcccttgtctcttc-gatgttccagtgaaca-aatcaagattttgaggcttttgtttcagGGTTTTGAGAAAATGATATCAGGGATGTACTTGGGTGACATTGTGAGGAGAGTTATTCTCAGAATGTCACAGGAGTCAGACATTTTTGGACCTGTTTCTT
       | | || ||    ||  |  || | | || |  | |   ||  |  || ||||||  | ||| | | |||||||||||||||||||||||||| |||||  | |||||||| ||||| ||||| |||||||  ||||||   ||||| || || ||||||||  ||||| 
------gtgagtttctgcatctgatgactcctgttgcttgatttgtcatgactaaaattttggagatttgggtgcagGGTTTTGAGAAAATGATATCAGGAATGTATCTTGGTGACATCGTGAGAAGAGTCATTCTCAAGATGTCATTAGAGTCGGATATGTTTGGACCAATTTCTC

upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT1G50460.1 (Arabidopsis thaliana), 3'ss of exon 6
------------------gtacagttcaattacttgcccttgtctcttcgatgttccagtgaacaa-atcaagat--tttgaggcttttgtttcagGGTTTTGAGAAAATGATATCAGGGATGTACTTGGGTGACATTGTGAGGAGAGTTATTCTCAGAATGTCACAGGAGTCAGACATTTTTGGACCTGTTTCTT
                        ||     | |||   |||  |  |   | ||  |   |  || ||||| ||  |||| || || |     |||| |||||||| ||||||||||| |||||  |||||||||||||  | ||||| |||||| | |||||| | || || || || ||||||||  | ||  
gtaatctttgccatacttccctgtttttccgatttggtattgcgttattagtttttaaccaattaacatcaacatcatttggggtttcttacatagGGATTTGAGAAGATGATATCAGGAATGTATCTGGGTGACATTGTTCGTAGAGTAATTCTCCGCATGTCAGAAGATTCTGATATCTTTGGACCCATCTCGC

upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: EFJ26298 (Selaginella moellendorffii), 3'ss of exon 6
gtacagttcaattacttgcccttgtctcttcgatgttccagtgaacaaatcaagattttgaggcttttgttt-cagGGTTTTGAGAAAATGATATCAGGGATGTACTTGGGTGACATTGTGAGGAGAGTTATTCTCAGAATGTCACAGGAGTCAGACATTTTTGG-ACCTGTTTCTT
                            |  |||| |        |   |  || |   |  ||| |   |   |||  ||||||||  || | || || |||||| ||||||||||||||||||| || |||||||   |  | |||||  |   | | |||||   | |  |   
---------------------------gtgagatgcttgcaattgcttgtacagctgacgcagctgtgcctggtagGCGTTTGAGAAGCTGTTTTCGGGAATGTACCTGGGTGACATTGTGAGGAGGGTCATTCTCAAGCTTGCGCAGGATGCTTGCCTGTTTGGCGGCAGCATAC-

upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: EFJ25912 (Selaginella moellendorffii), 3'ss of exon 6
gtacagttcaattacttgcccttgtctcttcgatgttccagtgaacaaatcaagattt-tgaggcttttgtttcagGGT-----TTTGAGAAAATGATATCAGGGATGTACTTGGGTGACATTGTGAGGAGAGTTATTCTCAGAATGTCACAGGAGTCAGACATTTTTGGACCTGTTTCTT
                     |   ||     |||  |     ||||| ||      |      | | ||||  |  ||     || ||||| |||||||| || |||||| ||||||||||||||||||||||  |    | | || |    ||  | |   | ||||||          
--------------------gtaagcttgaaaatgaccacaaaaacaattcctaccctaccctacctgtgttggactgtagATATTCGAGAAGATGATATCTGGAATGTACCTGGGTGACATTGTGAGGAGAGTGTTGTGGAAACTGGCTGCCGAAGCGGCATTCTTTGGAGGAAAGGTAC

upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: EFJ10895 (Selaginella moellendorffii), 3'ss of exon 6
gtacagttcaattacttgcccttgtctcttcgatgttccagtgaacaaatcaagattt-tgaggcttttgtttcagGGT-----TTTGAGAAAATGATATCAGGGATGTACTTGGGTGACATTGTGAGGAGAGTTATTCTCAGAATGTCACAGGAGTCAGACATTTTTGGACCTGTTTCTT
                     |   ||     |||  |     ||||| ||      |      | | ||||| |  ||     || |||||||||||||| || |||||| ||||||||||||||||||||||  |    | | || |    ||  | |   | ||||||          
--------------------gtaagcttgaaaatgaccacaaaaacaattcctaccctaccctacctgtgtttgactgtagATATTCGAGAAAATGATATCTGGAATGTACCTGGGTGACATTGTGAGGAGAGTGTTGTGGAAACTGGCTGCCGAAGCGGCATTCTTTGGAGGAAAGGTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgtctcttcgatgttccagtgaacaaatcaagattttgaggcttttgtttcagGGTTTTGAGAAAATGATATCAGGGATGTACTTGGGTGACATTGTGAGGAGAGTTATTCTCAGAATGTCACAGGAGTCAGACATTTTTGGACCTGTTTCTT
                                           cttttgtttc  CT-rich tract
                               aagatttt  TA-rich tract