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...ctatacagcttggtttctgaatattagttcatagtgagatgttatacttccaaggtttagtgttttggtcactataattattttttctttgttattatagATCCGCGTGATGACCTAAGTGGGATGGATGTTGCAAGAAAG
species | Vitis vinifera |
transcript | Vv06s0009g01460.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATTCAGTCAAGTTGTTAAGGATGCCAAAAGCTTGGGCTATACTGAACCAG ATCCGCGTGATGACCTAAGTGGGATGGATGTTGCAAGAAAGEST: gi|110409000|gb|EC974653.1|EC974653
genomic: ATTCAGTCAAGTTGTTAAGGATGCCAAAAGCTTGGGCTATACTGAACCAGgtattttgat ... gttattatagATCCGCGTGATGACCTAAGTGGGATGGATGTTGCAAGAAAG
EST: ATTCAGTCAAGTTGTTAAGGATGCCAAAAGCTTGGGCTATACTGAACCAG ATCCGCGTGATGACCTAAGTGGGATGGATGTTGCAAGAAAG
genomic: ATTCAGTCAAGTTGTTAAGGATGCCAAAAGCTTGGGCTATACTGAACCAGgtattttgat ... gttattatagATCCGCGTGATGACCTAAGTGGGATGGATGTTGCAAGAAAG
acttccaaggtttagtgttttggtcactataattattttttctttgttattatagATCCGCGTGATGACCTAAGTGGGATGGATGTTGCAAGAAAG
ttattttttctttgtt CT-rich tract
tcactataattatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctatacagcttggtttctgaatattagttcatagtgagatgttatacttccaaggtttagtgttttggtcactataattattttttctttgttattatagATCCGCGTGATGACCTAAGTGGGATGGATGTTGCAAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - agcttgg
- - - - - - - - - - - - - - - - - - - - - - - cttccaa