1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gcctttcttcatttatttatttttaccaaattattattcatgttgtattagtaccatgatgcagtccttgtaggatattgaccctttttgtactgtgcagCTTCTTGGTAGGGTGTTTAACATTCTTCGGGAGAATAATCCAGAGCTTGCTGGAGATAGGAGGAGAACAGTTATGAGGCCCCCACAAGTCCTTCGTGAAG
species | Vitis vinifera |
transcript | Vv06s0004g08180.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AACCACGGTATCCTTGGGAAGGAAGTGACCGAGACTACAAATATGAGGAG CTTCTTGGTAGGGTGTTTAACATTCTTCGGGAGAATAATCCAGAGCTTGCTEST: gi|34548729|gb|CF516961.1|CF516961
genomic: AACCACGGTATCCTTGGGAAGGAAGTGACCGAGACTACAAATATGAGGAGgtatgtgttt ... tactgtgcagCTTCTTGGTAGGGTGTTTAACATTCTTCGGGAGAATAATCCAGAGCTTGCT
EST: AACCACGGTATCCTTGGGAAGGAAGTGACCGAGACTACAAATATGAGGAG CTTCTTGGTAGGGTGTTTAACATTCTTCGGGAGAATAATCCAGAGCTTGCTEST: gi|26257846|gb|CA808909.1|CA808909
genomic: AACCACGGTATCCTTGGGAAGGAAGTGACCGAGACTACAAATATGAGGAGgtatgtgttt ... tactgtgcagCTTCTTGGTAGGGTGTTTAACATTCTTCGGGAGAATAATCCAGAGCTTGCT
EST: AACCACGGTATCCTTGGGAAGGAAGTGACCGAGACTACAAATATGAGGAG CTTCTTGGTAGGGTGTTTAACATTCTTCGGGAGAATAATCCAGAGCTTGCTEST: gi|110412214|gb|EC977955.1|EC977955
genomic: AACCACGGTATCCTTGGGAAGGAAGTGACCGAGACTACAAATATGAGGAGgtatgtgttt ... tactgtgcagCTTCTTGGTAGGGTGTTTAACATTCTTCGGGAGAATAATCCAGAGCTTGCT
EST: AACCACGGTATCCTTGGGAAGGAAGTGACCGAGACTACAAATATGAGGAG CTTCTTGGTAGGGTGTTTAACATTCTTCGGGAGAATAATCCAGAGCTTGCTEST: gi|34548647|gb|CF516879.1|CF516879
genomic: AACCACGGTATCCTTGGGAAGGAAGTGACCGAGACTACAAATATGAGGAGgtatgtgttt ... tactgtgcagCTTCTTGGTAGGGTGTTTAACATTCTTCGGGAGAATAATCCAGAGCTTGCT
EST: AACCACGGTATCCTTGGGAAGGAAGTGACCGAGACTACAAATATGAGGAG CTTCTTGGTAGGGTGTTTAACATTCTTCGGGAGAATAATCCAGAGCTTGCTEST: gi|110363156|gb|EC926727.1|EC926727
genomic: AACCACGGTATCCTTGGGAAGGAAGTGACCGAGACTACAAATATGAGGAGgtatgtgttt ... tactgtgcagCTTCTTGGTAGGGTGTTTAACATTCTTCGGGAGAATAATCCAGAGCTTGCT
EST: AACCACGGTATCCTTGGGAAGGAAGTGACCGAGACTACAAATATGAGGAG CTTCTTGGTAGAGTGTTTAACATTCTTCGGGAGAATAATCCAGAGCTTGCT
genomic: AACCACGGTATCCTTGGGAAGGAAGTGACCGAGACTACAAATATGAGGAGgtatgtgttt ... tactgtgcagCTTCTTGGTAGGGTGTTTAACATTCTTCGGGAGAATAATCCAGAGCTTGCT
tattagtaccatgatgcagtccttgtaggatattgaccctttttgtactgtgcagCTTCTTGGTAGGGTGTTTAACATTCTTCGGGAGAATAATCCAGAGCTTGCTGGAGATAGGAGGAGAACAGTTATGAGGCCCCCACAAGTCCTTCGTGAAG
tattgac putative branch site (score: 2)
ccctttttgt CT-rich tract
tttttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcctttcttcatttatttatttttaccaaattattattcatgttgtattagtaccatgatgcagtccttgtaggatattgaccctttttgtactgtgcagCTTCTTGGTAGGGTGTTTAACATTCTTCGGGAGAATAATCCAGAGCTTGCTGGAGATAGGAGGAGAACAGTTATGAGGCCCCCACAAGTCCTTCGTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
gcctttc
- - - - - - - - - - - -taccaaa
- - - - - - - - - - - - - - - - - - -tcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcagtcc