1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaaggttcttttagatccttctattggttcagtaaacctagacagcttatcaattcttgattctttagaccatagcatgaaatgcttgttactttggtagGGGAATTATGCAGTCTCTGGAGGAGTGAAAGGAGTGGAAGCGGTTGAAGCTAAGGCTAAGTCATTCAAGGCCCGAATGACG
species | Vitis vinifera |
transcript | Vv06s0004g07380.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGAAGTTGATGAAGATAATAAAGTCCAAATTGCAAATTTCTTATGCCCT GGGAATTATGCAGTCTCTGGAGGAGTGAAAGGAGTGGAAGCGGTTGAAGCTEST: gi|110687429|gb|EE064834.1|EE064834
genomic: AAGAAGTTGATGAAGATAATAAAGTCCAAATCGCAAATTTCTTATGCCCTgtaaggttct ... actttggtagGGGAATTATGCAGTCTCTGGAGGAGTGAAAGGAGTGGAAGCGGTTGAAGCT
EST: AAGAAGTTGATGAAGATAATAAAGTCCAAATCGCAAATTTCTTATGCCCT GGGAATTATGCAGTCTCTGGAGGAGTGAAAGGAGTGGAAGCGGTTGAAGCTEST: gi|30128526|gb|CB913865.1|CB913865
genomic: AAGAAGTTGATGAAGATAATAAAGTCCAAATCGCAAATTTCTTATGCCCTgtaaggttct ... actttggtagGGGAATTATGCAGTCTCTGGAGGAGTGAAAGGAGTGGAAGCGGTTGAAGCT
EST: AAGAAGTTGATGAAGATAATAAAGTCCAAATCGCAAATTTCTTATGCCCT GGGAATTATGCAGTCTCTGGAGGAGTGAAAGGAGTGGAAGCGGTTGAAGCT
genomic: AAGAAGTTGATGAAGATAATAAAGTCCAAATCGCAAATTTCTTATGCCCTgtaaggttct ... actttggtagGGGAATTATGCAGTCTCTGGAGGAGTGAAAGGAGTGGAAGCGGTTGAAGCT
cttatcaattcttgattctttagaccatagcatgaaatgcttgttactttggtagGGGAATTATGCAGTCTCTGGAGGAGTGAAAGGAGTGGAAGCGGTTGAAGCTAAGGCTAAGTCATTCAAGGCCCGAATGACG
tcttgat putative branch site (score: 4)
ttacttt putative PPT
attcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggttcttttagatccttctattggttcagtaaacctagacagcttatcaattcttgattctttagaccatagcatgaaatgcttgttactttggtagGGGAATTATGCAGTCTCTGGAGGAGTGAAAGGAGTGGAAGCGGTTGAAGCTAAGGCTAAGTCATTCAAGGCCCGAATGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC