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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttggacatgaatgcatgatgttttagcccagtatgattttgtaattgactgtcgttaatcttatggccattgtataatccgtggaaaaaaaaaaaaactattgcagCCTAGGCTGTTGGATGAGCGGCAAACAACCATATATAAAAGAGCAGTGGACAAAAATTATCACTTGAAAATGAAGTCGTCAAGGTTTATCTTCAGTGAAA

Basic information

species Vitis vinifera
transcript Vv06s0004g06870.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g06870.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA07G18500.1 (Glycine max), 3'ss of exon 6
gtaagtttggacatgaatgcatgatgttttagcccagtatgattttgtaattgactgtcgttaatcttatggccattgtataatccgtggaaaaaaaaaaaaactattgcagCCTAGGCTGTTGGATGAGCGGCAAACAACCATATATAAAAGAGCAGTGGACAAAAATTATCACTTGAAAATGAAGTCGTCAAGGTTTATCTTCAGTGAAA
                        |  || |      ||| |   | |     | | | ||  | ||||||  |||  |||||         |||     |  || |||||||||| |||||||||||||  ||| ||||| || ||||| || || || ||||| | |||||||||||| |||||  |||| ||||| || ||||||||||
-----------------------gtagttcaatt--atatcaacatatttactagtatggtagagcttatg--catgatataa------agtaaattttcattctcttgcagCCTAAGCTGTTGGATGAGAAGCAGACAACTATCTATAAGAGGGCTGTTGACAAGAGTTATCACTTGAAGATGAAAGCGTCTAGGTTCATTTTCAGTGAAA

upper sequence: Vv06s0004g06870.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA18G43390.1 (Glycine max), 3'ss of exon 6
gtaagtttggacatgaatgcatgatgttttagcccagtatgattttgtaattgactgtcgttaatcttatggccattgtataatccgtggaaaaaaaaaaaaactattgcagCCTAGGCTGTTGGATGAGCGGCAAACAACCATATATAAAAGAGCAGTGGACAAAAATTATCACTTGAAAATGAAGTCGTCAAGGTTTATCTTCAGTGAAA
                      | |   | |      ||| |   ||||    | | | ||  | ||||||  |||  || ||         |||     |  || |||||||||| |||||||||||||  ||| ||||| || ||||| || || || ||||| | |||||||||||| |||||  |||| ||||| || ||||||||| 
----------------------ggtaggtcaatt--atattaacatgtatactagtatggtagagcttatg--catgataaaa------agtaaattttcattctcttgcaGCCTAAGCTGTTGGATGAGAAGCAGACAACTATTTATAAGAGGGCTGTTGACAAGAGTTATCACTTGAAGATGAAAGCGTCTAGGTTCATTTTCAGTGAA-

upper sequence: Vv06s0004g06870.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: PP1S264_34V6.1 (Physcomitrella patens), 3'ss of exon 5
gtaagtttggacatgaatgcatgatgttttagcccagtatgattttgtaattgactgtcgttaatcttatggccattgtataatccgtggaaaaaaaaaaaaactattgcagCCTAGGCTGTTGGATGAGCGGCAAACAACCATATATAAAAGAGCAGTGGACAAAAATTATCACTTGAAAATGAAGTCGTCAAGGTTTATCTTCAGTGAAA
       |  |  | | |  | | | |   ||     |||   |||| | || ||||  ||     | | | |||| | || |    |  |  |         |   ||||||| | | |||| ||||||  ||| || ||  | ||||| || || |||||||| ||||||||| ||||||||||| | ||||| || |||||||| ||||
---taccttcatttaattata-ggtatagcagatagttat--ctttgaacttaactgaagtc--cttcaggaccatggcattaatgtttcatcactgtt----ccgatgcagCCCAAGTTGTTAGATGAGAAGCAGACCACAGTGTATAAGAGGGCTGTGGACAAGAATTATCACCTGAAAATGAAGGCATCAAGATTCATCTTCAGCGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgttaatcttatggccattgtataatccgtggaaaaaaaaaaaaactattgcagCCTAGGCTGTTGGATGAGCGGCAAACAACCATATATAAAAGAGCAGTGGACAAAAATTATCACTTGAAAATGAAGTCGTCAAGGTTTATCTTCAGTGAAA
 cgttaat  putative branch site (score: 4)
                              tggaaaaaaaaaaaaa  TA-rich tract