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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggcatacccacaaaaccctgagttaaatcagaacctagtagagatttttcactttcttctaacatttttcttattcttttgtgtttccagGAGATTGCACCACAGTATTCTGGTGTTCTACATG

Basic information

species Vitis vinifera
transcript Vv06s0004g06040.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g06040.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA02G38930.1 (Glycine max), 3'ss of exon 7
gttggcatacccacaaaaccctgagttaaatcagaacctagtagagatttttcactttcttctaacatttttcttat-tcttttgtgtttccagGAGATTGCACCACAGTATTCTGGTGTTCTACATG
       |  | |       |   || ||| ||     |  | |  |    ||   |   ||||| ||  |  | || |  |||||  |  |||||||||||||| ||||||||||||||| ||||||
------gtttctatttttagccatgtaaaaacattttttttttgttagaagtcttctgtctctaatataatattcatcttctttgttatcacagGAGATTGCACCGCAGTATTCTGGTGTTTTACATG

upper sequence: Vv06s0004g06040.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA14G36980.1 (Glycine max), 3'ss of exon 6
gttggcatacccacaaaaccctgagttaaatcagaacctagtagagatttttcactttcttctaacatttttcttat-tcttttgtgtttccagGAGATTGCACCACAGTATTCTGGTGTTCTACATG
|||   ||   ||   |    | |    |||       |  | |  |    ||   | | ||||| ||  |  | || |  |||||  |  |||||||||||||||| ||||||||||||| ||||||
gtttctattttcagtca--tgtaaaaacaatttattttttttggttagaagtcttctgcctctaatataatgttcatattctttgttatcacagGAGATTGCACCACGGTATTCTGGTGTTTTACATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161720682|gb|FC070620.1|FC070620
EST:     CCGTTGGGCTTAAATCATTCAGTCACTCTGGTTTTCTTGTGAACCTTCAG                         GAGATTGCACCACAGTATTCTGGTGTTCTACATG
genomic: CCGTTGGGCTTAAATCATTCAGTCACTCTGGTTTTCTTGTGAACCTTCAGgttggcatac ... gtgtttccagGAGATTGCACCACAGTATTCTGGTGTTCTACATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtagagatttttcactttcttctaacatttttcttattcttttgtgtttccagGAGATTGCACCACAGTATTCTGGTGTTCTACATG
                     ttctaac  putative branch site (score: 1)
                             tttttcttattctttt  CT-rich tract
                        taacatttttcttatt  TA-rich tract