Sequence
atgc intronic sequence ATGC exonic sequence...catcagattgattatgatatattaattgattttatttgaatttctatggatgagttagtcactcaattttggattggctattgtgcatgttgtgatacagGTGAAATCTAGAATGATGGGTGATTCAACCTACAAAAGCACTTTCGATTGTTTCTTCAAGACTTTGAAGAATGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g05940.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G165629_T02 (Zea mays), 3'ss of exon 6
----------------catcagattgattatgatatattaattgattttatttgaatttctatggatgagttagtcactcaattttggattggctattgtgc-atg-ttgtgatacagGTGAAATCTAGAATGATGGGTGATTCAACCTACAAAAGCACTTTCGATTGTTTCTTCAAGACTTTGAAGAATGAG
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gtatgctctgtaaaatctggatatgcacactaccaagttcctagttgcaatatgtgtttagctcaatgtgaatcctgccctgatttgcatcaattgaactaccatgacttttgtttagGTGAAATCAAGAATGATGGGTGATTCAATGTACAAAAGTACTCTTGATTGTTTTGCCAAGACACTAAAGAATGAT
upper sequence: Vv06s0004g05940.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM5G852877_T01 (Zea mays), 3'ss of exon 6
----------------catcagattgattatgatatattaattgattttatttgaatttctatggatgagttagtcactcaattttggattggctattgtgc-atg-ttgtgatacagGTGAAATCTAGAATGATGGGTGATTCAACCTACAAAAGCACTTTCGATTGTTTCTTCAAGACTTTGAAGAATGAG
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gtatgctctgcaaattctggatatgcacactaccaagttcccagttgcaatatgtgtttagctcaatgtgaatcctgcgctgatttgcaccaattgagctaccatgacttttgtttagGTGAAATCAAGAATGATGGGTGATTCAACGTACAGAAGTACTCTTGACTGTTTTACCAAGACATTAAAGAATGAT
upper sequence: Vv06s0004g05940.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA18G07540.1 (Glycine max), 3'ss of exon 6
catcagattgattatgatatattaattgattttatttgaatttctatggatgagtta-gtcactcaattttggattggctattgtgcatgttgtgatacagGTGAAATCTAGAATGATGGGTGATTCAACCTACAAAAGCACTTTCGATTGTTTCTTCAAGACTTTGAAGAATGAG-
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--gtaagtttcctaaacaatattggtgaaattcctatgaataagcacattctacttttatgaatcaagggttgacttatatccatgctcataattctccaggTGAAATCCAGGATGATGGGGGATTCAACCTACAAAAGCACATTTGACTGCTTTCTCAAGACTTTGCTTAATGAGG
upper sequence: Vv06s0004g05940.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G45130.1 (Glycine max), 3'ss of exon 6
catcagattgattatga-tatattaattgattttatttgaatttctatggatgagttagtcactcaattttggattggctattg-tgcatgtt-gtgatacagGTGAAATCTAGAATGATGGGTGATTCAACCTACAAAAGCACTTTCGATTGTTTCTTCAAGACTTTGAAGAATGAG
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---gagaaccattgcaagtttcctaaacaatattggtgaaattcctatgaagaagcagcctctacttttatgaagcaagggttgacttatatccatgctccagGTGAAATCCAGGATGATGGGGGATTCAACCTACAAAAGCACATTTGAATGCTTTCTCAAGACTTTGCTTAATGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atggatgagttagtcactcaattttggattggctattgtgcatgttgtgatacagGTGAAATCTAGAATGATGGGTGATTCAACCTACAAAAGCACTTTCGATTGTTTCTTCAAGACTTTGAAGAATGAG
tcaatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
catcagattgattatgatatattaattgattttatttgaatttctatggatgagttagtcactcaattttggattggctattgtgcatgttgtgatacagGTGAAATCTAGAATGATGGGTGATTCAACCTACAAAAGCACTTTCGATTGTTTCTTCAAGACTTTGAAGAATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggattgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatgt