Sequence
atgc intronic sequence ATGC exonic sequence...tggaaggttcctcggttatcaaaaataaaaaataaaaaataagaattttgttagattacagaaagttgatgtaggtactccccctatttaatttctgcagGCACTTGACCTGATACGTGGCAAGAATTTTCTGATGTTAATGGACTCATGTTTGGAGGGCCATTTCTCAAATGATGATGGAACTGAATTAGTGCGGTTAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g05810.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA11G14240.1 (Glycine max), 3'ss of exon 6
--tggaaggttcctcggttatcaaaaataaaaaataaaaaataagaattttgttagattacagaaagttgatgtaggtactccccctatttaatttctgcagGCACTTGACCTGATACGTGGCAAGAATTTTCTGATGTTAATGGACTCATGTTTGGAGGGCCATTTCTCAAATGATGATGGAACTGAATTAGTGCGGTTAG
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tgcaaaagcatcgtttgatggtttggcttaaaatgaccatatcatcatataaatatataaatccataatcaaataggtaagataatccctttac--ctgcagGCACTTGACCTTATACAAGGCAAAAATTTTCTGTTGCTGATGGACTCATGTTTGGAAGGTCATTTTTCAAATGATGATGGGACTGAGTTAGTGAGATTAG
upper sequence: Vv06s0004g05810.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA13G41600.1 (Glycine max), 3'ss of exon 6
-------tggaaggttcctcggttatcaaaaataaaaaataaaaaataagaattttgttagattacagaaagttgatgtaggtactccccctatttaatttctgcagGCACTTGACCTGATACGTGGCAAGAATTTTCTGATGTTAATGGACTCATGTTTGGAGGGCCATTTCTCAAATGATGATGGAACTGAATTAGTGCGGTTAG
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actgggtttacagtagcatc--ctatgatagatttgctcaaaatgatcagaacaattaaagagttcatgaa--taaaacgggtgcataatcctttcaatt---gtagGCACTTGACCTAATACGTGGCAAAAACTTTCTGATGCTGGTGGACTCATGTTTGGAAGGTCATATTTCAAATGATGATGGAACTGAGATAGTGAGATTAG
upper sequence: Vv06s0004g05810.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA12G06200.1 (Glycine max), 3'ss of exon 6
-----------------------------------------------------------------------------------------tggaaggttcctcggttatcaaaaataaaaaataa---aaaataagaattttgttagattacagaaagttgatgtaggtactccccctatttaatttctgcagGCACTTGACCTGATACGTGGCAAGAATTTTCTGATGTTAATGGACTCATGTTTGGAGGGCCATTTCTCAAATGATGATGGAACTGAATTAGTGCGGTTAG
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gtacactctcatttattgtctttcattttaatttaaggtggcattgtgttcagtgaatctttgacctgtacaatgttggcactttacagttgaattttactagatttgcaaaaacatggtttggcttaaaatgatcatatcgtcatataagtatataaaatcataaactaataggtaagataatccc-acagGCACTTGACCTTATACGAGGCAAAAATTTTCTGTTGCTGATGGACTCATGTTTGGAAAGTCATTTTTCAAATGATGATGGGACTGAGTTAGTGAGATTAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30299737|gb|CB976531.1|CB976531EST: GCACACTATTGCTTGATCTTCTCAGTGGAAAACATATCCCCCCAAGCCAT GCACTCGACCTGA
genomic: GCACACTATTGCTTGATCTTCTCAGTGGAAAACATATCCCCCCAAGCCATgtaagctcca ... atttctgcagGCACTTGACCTGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttgttagattacagaaagttgatgtaggtactccccctatttaatttctgcagGCACTTGACCTGATACGTGGCAAGAATTTTCTGATGTTAATGGACTCATGTTTGGAGGGCCATTTCTCAAATGATGATGGAACTGAATTAGTGCGGTTAG
atttaat putative branch site (score: 4)
tttctgc CT-rich tract
tatttaatttct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tggaaggttcctcggttatcaaaaataaaaaataaaaaataagaattttgttagattacagaaagttgatgtaggtactccccctatttaatttctgcagGCACTTGACCTGATACGTGGCAAGAATTTTCTGATGTTAATGGACTCATGTTTGGAGGGCCATTTCTCAAATGATGATGGAACTGAATTAGTGCGGTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - -caaaaat
- - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -acagaaa