Sequence
atgc intronic sequence ATGC exonic sequence...ttgatattcaaatgtatgttctcctggattacctgtcatggcgtttctgtgtgtgtacttcgttgtttcttagtcaatcttttgcttttatttttaacagCATGTTCTGGAGCATGGACAACCACACGAGCGCTCTGCTATAATTAAGGAATTAGCTGGAAAGATAGTTCAGATGAGTCAGCAGAAGTTTGCCTCCAATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g05100.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA11G14530.1 (Glycine max), 3'ss of exon 7
ttgata-ttcaaatgtatgttctcctggattacctgtcatggcgttt-ctgtgtgtgtacttcgttgtttcttagtcaatcttttgcttttatttttaacagCATGTTCTGGAGCATGGACAACCACACGAGCGCTCTGCTATAATTAAGGAATTAGCTGGAAAGATAGTTCAGATGAGTCAGCAGAAGTTTGCCTCCAATG
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-cgccacttcccttatatccctttacttcctaaatgtaatactgtttgctcttcatgtgggttgatctcttgcttttggtttctt-ctctccttgataacagCATGTTCTGGAACATGGGAAGCCTCATGAGCGTTCTTCTATAATAAAGGAATTAGCAGACAAGATAGTTCAAATGAGTCAACAGAAGTTTGCCTCCAATG
upper sequence: Vv06s0004g05100.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA15G04060.2 (Glycine max), 3'ss of exon 8
ttgatattcaaatgtatgttctcct-ggattacctgtcatggcgtttctgtgtgtgtacttcgttgtttcttagtcaatcttttgcttttatttttaacagCATGTTCTGGAGCATGGACAACCACACGAGCGCTCTGCTATAATTAAGGAATTAGCTGGAAAGATAGTTCAGATGAGTCAGCAGAAGTTTGCCTCCAATG
| | || | | || || | || | || || | | || | |||| | | |||| | | | | | | | ||||||||||| || |||||||| |||| || ||||| || || || || ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
ataacatgccatccaatttttttcttgtgatatatgggcttctatctccactcaaatgcttc-tgatctcttgcttcgtttcatcttctcttaaataacagCATGTACTTGAGCATGGGAAACCTCATGAGCGATCCGCCATTATCAAGGAATTAGCAGGAAAGATAGTTCAAATGAGTCAGCAGAAGTTTGCCTCAAATG
upper sequence: Vv06s0004g05100.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA11G14500.1 (Glycine max), 3'ss of exon 8
--ttgatattcaaatgtatgttctcctggattacctgtcatggcgttt-ctgtgtgtgtacttcgttgtttcttagtcaatcttttgcttttatttttaacagCATGTTCTGGAGCATGGACAACCACACGAGCGCTCTGCTATAATTAAGGAATTAGCTGGAAAGATAGTTCAGATGAGTCAGCAGAAGTTTGCCTCCAATG
| | | ||| | || || || ||| || |||| || | ||| | | | | | | | | || || | || ||||||||||| ||||| ||||| | | || ||||| ||| ||||||| ||||||||||| || ||||||||||| |||||||| |||||||||||||||||||
cactacttccctaatattcctttacccc--ctaaatgttatactgtttgctatacatgtgggttgatctcttgcttttggtttctt-ctctccttgataacagCATGTGCTGGAACATGGGAAGTCTCATGAGCGTTCTTCTATAATAAAGGAATTAGCAGGCAAGATAGTTCAAATGAGTCAACAGAAGTTTGCCTCCAATG
upper sequence: Vv06s0004g05100.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA11G14550.1 (Glycine max), 3'ss of exon 9
--ttgatattcaaatgtatgttctcctggattacctgtcatggcgttt-ctgtgtgtgtacttcgttgtttcttagtcaatcttttgcttttatttttaacagCATGTTCTGGAGCATGGACAACCACACGAGCGCTCTGCTATAATTAAGGAATTAGCTGGAAAGATAGTTCAGATGAGTCAGCAGAAGTTTGCCTCCAATG
| | ||| | || || || ||| || |||| || | ||| | | | | | | | | || || | || ||||||||||| ||||| ||||| | || || ||||| ||| |||||| ||||||||||| || ||||||||||| |||||||| |||||||||||||||||||
cactacttccttaatattcctttacccc--ctaaatgttatactgtttgctatacatgtgggttgatctcttgcttttggtttctt-ctctccttgataacagCATGTGCTGGAACATGGGAAGCCTCATGAGCGTTCTTGTATAATAAAGGAATTAGCAGGCAAGATAGTTCAAATGAGTCAACAGAAGTTTGCCTCCAATG
upper sequence: Vv06s0004g05100.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA12G06430.1 (Glycine max), 3'ss of exon 6
-ttgatattcaaatg-tatgttctcctgg-attacctgtcatggcgtttctgtgtgtgtacttcgttgtttcttagtcaatcttttgcttttatttttaacagCATGTTCTGGAGCATGGACAACCACACGAGCGCTCTGCTATAATTAAGGAATTAGCTGGAAAGATAGTTCAGATGAGTCAGCAGAAGTTTGCCTCCAATG
| |||||| | || | || ||| || || || || | |||| | | | | | | || | || || | || ||||||||||| ||||| ||||| | || || || || ||| |||| || ||||||||||| || ||||||||||| |||||||| |||||||||||||||||||
cctaatattcctttactacctaaatgtgatattgtttgctatat--ttcctatacgtgtgggttgatctcttgcttttgatttctt-ctctccttgataacagCATGTGCTGGAACATGGGAAGCCTCATGAACGTTCTTCTATCATAAAGGAATTAGCAGGCAAGATAGTTCAAATGAGTCAACAGAAGTTTGCCTCCAATG
upper sequence: Vv06s0004g05100.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA12G06450.3 (Glycine max), 3'ss of exon 7
---ttgatattcaaatgtatgttctcctggattacctgtcatggcgttt-ctgtgtgtgtacttcgttgtttcttagtcaatcttttgcttttatttttaacagCATGTTCTGGAGCATGGACAACCACACGAGCGCTCTGCTATAATTAAGGAATTAGCTGGAAAGATAGTTCAGATGAGTCAGCAGAAGTTTGCCTCCAATG
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tctctacttccctaatatcctttacctc---ctaaatgtgaaattgtttgctgtacatgtggcttgatctcttgcttttggtttctt-ctctccttgataacagCATGTGCTGGAACATGGGAAGCCTCATGAGCGTTCTTCTATAATAAAGGAATTAGCAGACAAGATAGTGCAAATGAGTCAACAGAAGTTTGCCTCCAATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctgtgtgtgtacttcgttgtttcttagtcaatcttttgcttttatttttaacagCATGTTCTGGAGCATGGACAACCACACGAGCGCTCTGCTATAATTAAGGAATTAGCTGGAAAGATAGTTCAGATGAGTCAGCAGAAGTTTGCCTCCAATG
tcttttgcttttattt CT-rich tract
aatcttttgcttttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgatattcaaatgtatgttctcctggattacctgtcatggcgtttctgtgtgtgtacttcgttgtttcttagtcaatcttttgcttttatttttaacagCATGTTCTGGAGCATGGACAACCACACGAGCGCTCTGCTATAATTAAGGAATTAGCTGGAAAGATAGTTCAGATGAGTCAGCAGAAGTTTGCCTCCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - tgtatgt
- - - - - - - - - - -tcctgga
- - - - - - - - - - - - - - - - - -tcatggc
- - - - - - - - - - - - - - - - - - - - - - - - gtgtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttttgc