1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atatagatgtgggcattgaggttgggagaggaagtgggcatctgtttcttaatcattatggatactctcttgtgtactgtttttaatttctcacttccagTTTGACGAGAAGGCTAGGCAAGACTCTAGAAAGGGGGACAGCAGCATGAAGGGTTCAGAAGATGAACTGACATGCAGCATTTGCTTGGAGCAAGTCAACA
species | Vitis vinifera |
transcript | Vv06s0004g05080.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGAGGGGTCATCAATGCAACAGGCTGCATCTTCTTCAGCCTCAGCTGAG TTTGACGAGAAGGCTAGGCAAGACTCTAGAAAGGGGGACAGCAGCATGAAGEST: gi|110400098|gb|EC966641.1|EC966641
genomic: TGAGGGGTCATCAATGCAACAGGCTGCATCTTCTTCAGCCTCAGCTGAGgtattcttct ... tcacttccagTTTGACGAGAAGGCTAGGCAAGACTCTAGAAAGGGGGACAGCAGCATGAAG
EST: TGAGGGGTCATCAATGCAACAGGCTGCATCTTCTTCAGCCTCAGCTGAG TTTGACGAGAAGGCTAGGCAAGACTCTAGAAAGGGGGACAGCAGCATGAAGEST: gi|34543939|gb|CF512171.1|CF512171
genomic: TGAGGGGTCATCAATGCAACAGGCTGCATCTTCTTCAGCCTCAGCTGAGgtattcttct ... tcacttccagTTTGACGAGAAGGCTAGGCAAGACTCTAGAAAGGGGGACAGCAGCATGAAG
EST: TGAGGGGTCATCAATGCAACAGGCTGCATCTTCTTCAGCCTCAGCTGAG TTTGACGAGAAGGCTAGGCAAGACTCTAGAAAGGGGGACAGCAGCATGAAGEST: gi|110402228|gb|EC959605.1|EC959605
genomic: TGAGGGGTCATCAATGCAACAGGCTGCATCTTCTTCAGCCTCAGCTGAGgtattcttct ... tcacttccagTTTGACGAGAAGGCTAGGCAAGACTCTAGAAAGGGGGACAGCAGCATGAAG
EST: TGAGGGGTCATCAATGCAACAGGCTGCATCTTCTTCAGCCTCAGCTGAG TTTGACGAGAAGGCTAGGCAAGACTCTAGAAAGGGGGACAGCAGCATGAAGEST: gi|34544027|gb|CF512259.1|CF512259
genomic: TGAGGGGTCATCAATGCAACAGGCTGCATCTTCTTCAGCCTCAGCTGAGgtattcttct ... tcacttccagTTTGACGAGAAGGCTAGGCAAGACTCTAGAAAGGGGGACAGCAGCATGAAG
EST: TGAGGGGTCATCAATGCAACAGGCTGCATCTTCTTCAGCCTCAGCTGAG TTTGACGAGAAGGCTAGGCAAGACTCTAGAAAGGGGGACAGCAGCATGAAG
genomic: TGAGGGGTCATCAATGCAACAGGCTGCATCTTCTTCAGCCTCAGCTGAGgtattcttct ... tcacttccagTTTGACGAGAAGGCTAGGCAAGACTCTAGAAAGGGGGACAGCAGCATGAAG
ttcttaatcattatggatactctcttgtgtactgtttttaatttctcacttccagTTTGACGAGAAGGCTAGGCAAGACTCTAGAAAGGGGGACAGCAGCATGAAGGGTTCAGAAGATGAACTGACATGCAGCATTTGCTTGGAGCAAGTCAACA
ttctcac putative branch site (score: 2)
tttctcacttcc CT-rich tract
tactgtttttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatagatgtgggcattgaggttgggagaggaagtgggcatctgtttcttaatcattatggatactctcttgtgtactgtttttaatttctcacttccagTTTGACGAGAAGGCTAGGCAAGACTCTAGAAAGGGGGACAGCAGCATGAAGGGTTCAGAAGATGAACTGACATGCAGCATTTGCTTGGAGCAAGTCAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - -ggttggg
- - - - - - - - - - - - - agaggaa