Sequence
atgc intronic sequence ATGC exonic sequence...ggggccattctttctaacttcccagaaagtgtaaacgcctttgttgattatttccatctatggaaattgtacatgctaatttcccatacttcactcgcagACATATCTCCAGTCCACTACTGTTCGATTAGAAGAATGGAGGATCAAGAGAACTGATACAGAGCAATGGATGCACCACAGGCAGCTACCTGCGGAATTGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g02670.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA12G29840.1 (Glycine max), 3'ss of exon 5
ggggccatt--ctttctaacttcccagaaagtgtaaacgcctttgttgattatttccatctatggaaattgtacatgctaatttcccatacttcactcgcagACATATCTCCAGTCCACTACTGTTCGATTAGAAGAATGGAGGATCAAGAGAACTGATACAGAGCAATGGATGCACCACAGGCAGCTACCTGCGGAATTGA
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ggagaaagtgacaaaacaaattgaattaatttgaaaatgttccatccttctaaattgacattaataaggcatatatgctaatagaagttgaatt--tcgcagACATATCTCCAATCAACTACTGTTCGCTTAGAAGAGTGGAGGGTGAAAAGAACTGATACAGAGCAATGGATGCATCACAGGCAACTACCTCCAGAGCTAA
upper sequence: Vv06s0004g02670.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA13G39960.1 (Glycine max), 3'ss of exon 2
ggggccattctttctaacttcccagaaagtgtaaacgcctttg-ttgattatttccatctatggaaattgtacatgctaatttcccatacttca--ctcgcagACATATCTCCAGTCCACTACTGTTCGATTAGAAGAATGGAGGATCAAGAGAACTGATACAGAGCAATGGATGCACCACAGGCAGCTACCTGCGGAATTGA
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--aattgaatttgaaaatgtttcatccttctaaattgacattaattaggcatatctatctatctat-ctatatatgtatgctaatagaagttgaatttcgcagACATATCTCCAATCAACTACTGTTCGCTTAGAAGAGTGGAGGGTGAAAAGAACTGATACAGAACAATGGATGCATCACAGGCAACTACCTCCAGAACTAA
upper sequence: Vv06s0004g02670.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA12G08160.1 (Glycine max), 3'ss of exon 4
----ggggccattctttctaacttcccagaaagtgtaaacgcctttgttgattatttccatctatggaaattgtacatgctaatttcccatacttcactcgcagACATATCTCCAGTCCACTACTGTTCGATTAGAAGAATGGAGGATCAAGAGAACTGATACAGAGCAATGGATGCACCACAGGCAGCTACCTGCGGAATTGA
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agttagccgcatagcattgaattgttagaaaacacttgaccagcctataaactgactctgttcttgtatat-gtggattaatagaactcaaattttg---gcagACATACCTGCAATCAACAACTGTTCGCTTAGAAGAGTGGAGGGTTAGAAGAACTGATACAGAACAATGGATGCATCACAGGCAGCTTCCTCCAGAACTAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gattatttccatctatggaaattgtacatgctaatttcccatacttcactcgcagACATATCTCCAGTCCACTACTGTTCGATTAGAAGAATGGAGGATCAAGAGAACTGATACAGAGCAATGGATGCACCACAGGCAGCTACCTGCGGAATTGA
tgctaat putative branch site (score: 2)
cttcactc putative PPT
aaattgta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggggccattctttctaacttcccagaaagtgtaaacgcctttgttgattatttccatctatggaaattgtacatgctaatttcccatacttcactcgcagACATATCTCCAGTCCACTACTGTTCGATTAGAAGAATGGAGGATCAAGAGAACTGATACAGAGCAATGGATGCACCACAGGCAGCTACCTGCGGAATTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - ccattct
- - - - - - - - -cttccca
- - - - - - - - - - - - - - - - - - gcctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccatac