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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttacttcctattgcagctcaaaagctaaattacagtggcatcacccctatttgtcttacactattggcaaattctcatggttttcacatttgtatgatcactatagGTACATTATTTCTGTAATCCTTTTTTGGAAATTAATGCAACAAGTCGAACTCTTACCTCCAAGTACCAAAGTTCTGCGATTTGGTCGATTTCTGAAAAAT

Basic information

species Vitis vinifera
transcript Vv06s0004g02140.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110699707|gb|EE076951.1|EE076951
EST:     GTTTTCCATATGGGTGTCGGTGGTGCAGCCATTGCCCATGTTATATCTCA                         GTACATTATTTCTGTAATCCTTTTTTGGAAATTAATGCAACAAGTCGAACT
genomic: GTTTTCCATATGGGTGTCGGTGGTGCAGCCATTGCCCATGTTATATCTCAgtaagttact ... atcactatagGTACATTATTTCTGTAATCCTTTTTTGGAAATTAATGCAACAAGTCGAACT
EST: gi|294967324|gb|GW836678.1|GW836678
EST:     GTTTTCCATATGGGTGTCGGTGGTGCAGCCATTGCCCATGTTATATCTCA                         GTACATTATTTCTGTTATCCTCTTTTGGAGATTAAGGCAACAAGTCGAACT
genomic: GTTTTCCATATGGGTGTCGGTGGTGCAGCCATTGCCCATGTTATATCTCAgtaagttact ... atcactatagGTACATTATTTCTGTAATCCTTTTTTGGAAATTAATGCAACAAGTCGAACT
EST: gi|110698510|gb|EE076088.1|EE076088
EST:     GTTTTCCATATGGGTGTCGGTGGTGCAGCCATTGCCCATGTTATATCTCA                         GTACATTATTTCTGTAATCCTTTTTTGGAAATTAATGCAACAAGTCGAACT
genomic: GTTTTCCATATGGGTGTCGGTGGTGCAGCCATTGCCCATGTTATATCTCAgtaagttact ... atcactatagGTACATTATTTCTGTAATCCTTTTTTGGAAATTAATGCAACAAGTCGAACT
EST: gi|294965646|gb|GW837245.1|GW837245
EST:     GTTTTCCATATGGGTATCGGTGGTGCAGCCATTGCCCATGTTATATCTCA                         GTACATTATTTCTGTAATCCTTTTTTGGAAATTAATGCAACAAGTCGAACT
genomic: GTTTTCCATATGGGTGTCGGTGGTGCAGCCATTGCCCATGTTATATCTCAgtaagttact ... atcactatagGTACATTATTTCTGTAATCCTTTTTTGGAAATTAATGCAACAAGTCGAACT
EST: gi|30300493|gb|CB977287.1|CB977287
EST:     GTTTTCCATATGGGTGTCGGTGGTGCAGCCATTGCCCATGTTATATCTCT                         GTACATTATTTCTGTAATCCTTTTTTGGAAATTAATGCAACAAGTCGAACT
genomic: GTTTTCCATATGGGTGTCGGTGGTGCAGCCATTGCCCATGTTATATCTCAgtaagttact ... atcactatagGTACATTATTTCTGTAATCCTTTTTTGGAAATTAATGCAACAAGTCGAACT
EST: gi|30301245|gb|CB978039.1|CB978039
EST:     GTTTTCCATATGGGTGTCGGTGGTGCAGCCATTGCCCATGTTATATCTCA                         GTACATTATTTCTGTAATCCTTTTTTGGAAATTATTGCAACAAGTCGAACT
genomic: GTTTTCCATATGGGTGTCGGTGGTGCAGCCATTGCCCATGTTATATCTCAgtaagttact ... atcactatagGTACATTATTTCTGTAATCCTTTTTTGGAAATTAATGCAACAAGTCGAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcttacactattggcaaattctcatggttttcacatttgtatgatcactatagGTACATTATTTCTGTAATCCTTTTTTGGAAATTAATGCAACAAGTCGAACTCTTACCTCCAAGTACCAAAGTTCTGCGATTTGGTCGATTTCTGAAAAAT
 gtcttac  putative branch site (score: 3)
                                    atttgtat  TA-rich tract