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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtagaaagacccttatacctgcagtagttgccgtagatttctgaagtttcaaaccatgttctaatagcaaaactttcacttgtttgtcttatttacagAAAGTATTGAGAGATTACAACTTGAGAGAAAAAGCGCAAGCACAGCATCAGACTTATGCTTTAGGAATAAAAGAG

Basic information

species Vitis vinifera
transcript Vv05s0102g01110.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294967007|gb|GW839882.1|GW839882
EST:     GACATGTTACACTTCTTGCCGAAGGATGCCGAGGATCATTATCAGAG                         AAAGTATTGAGAGATTACAACTTGAGAGAAAAAGTGCAAGCACAGCATCAG
genomic: GACGTGTTACACTTCTTGCTGAAGGATGCCGAGGATCATTATCAGAGgtttgtagaa ... ttatttacagAAAGTATTGAGAGATTACAACTTGAGAGAAAAAGCGCAAGCACAGCATCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtttcaaaccatgttctaatagcaaaactttcacttgtttgtcttatttacagAAAGTATTGAGAGATTACAACTTGAGAGAAAAAGCGCAAGCACAGCATCAGACTTATGCTTTAGGAATAAAAGAG
               ttctaat  putative branch site (score: 2)
                                       tttgtctt  putative PPT
                                           tcttattta  TA-rich tract