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gtgaaaaatgcatagggttcatattatacttctttcccttggttttgaattccctcacaatagaagttccatcatttttgtgagcttccatgaagttcttccttttgactatgtgatagCTTTATTCGGAGTCTATTGCACGTTTTCAAGGAGGATCACCATACATTTATCCCTTGTATGGGTTAGGAGAGCTGCCCCAG
species | Vitis vinifera |
transcript | Vv05s0094g01550.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATGACTGCTACCTAAATGAGCCTGCAATTGATACTGTGAAGAGAATGAAG CTTTATTCGGAGTCTEST: gi|110701800|gb|EE079788.1|EE079788
genomic: ATGACTGCTACCTAAATGAGCCTGCAATTGATACTGTGAAGAGAATGAAGgtgaaaaatg ... tatgtgatagCTTTATTCGGAGTCT
EST: ATGACTGCTACCTAAATGAGCCTGCAATTGATACTGTGAAGAGAATGAAG CTTTATTCGGAGTCTATTGCACGTTTTCAAGGAGGATCACCATACATTTATEST: gi|110700674|gb|EE077534.1|EE077534
genomic: ATGACTGCTACCTAAATGAGCCTGCAATTGATACTGTGAAGAGAATGAAGgtgaaaaatg ... tatgtgatagCTTTATTCGGAGTCTATTGCACGTTTTCAAGGAGGATCACCATACATTTAT
EST: ATGACTGCTACCTAAACGAGCCTGCAATTGATACTGTGAAGAGAATGAAG CTTTATTCGGAGTCTATTGCACGTTTTCAAGGAGGATCACCATACATTTATEST: gi|110732501|gb|EE107845.1|EE107845
genomic: ATGACTGCTACCTAAATGAGCCTGCAATTGATACTGTGAAGAGAATGAAGgtgaaaaatg ... tatgtgatagCTTTATTCGGAGTCTATTGCACGTTTTCAAGGAGGATCACCATACATTTAT
EST: ATGACTGCTACCTAAATGAGCCTGCAATTGATACTGTGAAGAGAATGAAG CTTTATTCGGAGTCTATTGCACGTTTTCAAGGAGGATCACCATACATTTATEST: gi|27584731|gb|CB007426.1|CB007426
genomic: ATGACTGCTACCTAAATGAGCCTGCAATTGATACTGTGAAGAGAATGAAGgtgaaaaatg ... tatgtgatagCTTTATTCGGAGTCTATTGCACGTTTTCAAGGAGGATCACCATACATTTAT
EST: ATGACTGCTACCTAAATGAGCCTGCAATTGATACTGTGAAGAGAATGAAG CTTTATTCGGAGTCTATTGCACGTTTTCAAGGAGGATCACCGTACATTTATEST: gi|110724401|gb|EE100197.1|EE100197
genomic: ATGACTGCTACCTAAATGAGCCTGCAATTGATACTGTGAAGAGAATGAAGgtgaaaaatg ... tatgtgatagCTTTATTCGGAGTCTATTGCACGTTTTCAAGGAGGATCACCATACATTTAT
EST: ATGACTGCTACCTAAATGAGCCTGCAATTGATACTGTGAAGAGAATGAAG CTTTATTCGGAGTCTATTGCACGTTTTCAAGGAAGATCACCATACATTTATEST: gi|110371128|gb|EC934907.1|EC934907
genomic: ATGACTGCTACCTAAATGAGCCTGCAATTGATACTGTGAAGAGAATGAAGgtgaaaaatg ... tatgtgatagCTTTATTCGGAGTCTATTGCACGTTTTCAAGGAGGATCACCATACATTTAT
EST: ATGACTGCTACCTAAATGAGCCTGCAATTGATACTGTGAAGAGAATGAAG CTTTATTCGGAGTCTATTGCACGTTTTCAAGGAGGATCACCATACATTTATEST: gi|110685725|gb|EE062694.1|EE062694
genomic: ATGACTGCTACCTAAATGAGCCTGCAATTGATACTGTGAAGAGAATGAAGgtgaaaaatg ... tatgtgatagCTTTATTCGGAGTCTATTGCACGTTTTCAAGGAGGATCACCATACATTTAT
EST: GACTGCTACCTAAATGAGCCTGCA-TTNGATACTGTGAAAGAGA-TGAAG GEST: gi|110685725|gb|EE062694.1|EE062694
genomic: GACTGCTACCTAAATGAGCCTGCAATT-GATACTGTGAA-GAGAATGAAGgtgaaaaatg ... tatgtgatag-
EST: GACTGCTACCTAAATGAGCCTGCA-TTNGATACTGTGAAAGAGA-TGAAG GEST: gi|110687369|gb|EE064718.1|EE064718
genomic: GACTGCTACCTAAATGAGCCTGCAATT-GATACTGTGAA-GAGAATGAAGgtgaaaaatg ... tatgtgatag-
EST: ATGACTGCTACCTAAATGAGCCTGCAATTGATACTGTGAAGAGAATGAAG CTTTATTCGGAGTCTATTGCACGTTTTCAAGGAGGATCACCATACATTTATEST: gi|110701029|gb|EE078211.1|EE078211
genomic: ATGACTGCTACCTAAATGAGCCTGCAATTGATACTGTGAAGAGAATGAAGgtgaaaaatg ... tatgtgatagCTTTATTCGGAGTCTATTGCACGTTTTCAAGGAGGATCACCATACATTTAT
EST: GACTGCTACCNTAA-TGAGCCTGCAATTGATACTGTGAAGAGAAATGA-G CTTTATTCGGAGTCTATTGCACGTTTTCAAAGAGGATCACCATACATTTAEST: gi|110687516|gb|EE065012.1|EE065012
genomic: GACTGCTACC-TAAATGAGCCTGCAATTGATACTGTGAAGAGAA-TGAAGgtgaaaaatg ... tatgtgatagCTTTATTCGGAGTCTATTGCACGTTTTCAAGGAGGATCACCATACATTTA
EST: ATGACTGCTACCTANATGAGCCTGCAATTGATACTGTGAAGAGAATGAAG CTTTATTCGGAGTCTATTGCACGTTTTTCA-GGANGATCACCATACATTTAEST: gi|110700715|gb|EE077610.1|EE077610
genomic: ATGACTGCTACCTAAATGAGCCTGCAATTGATACTGTGAAGAGAATGAAGgtgaaaaatg ... tatgtgatagCTTTATTCGGAGTCTATTGCACGTTTT-CAAGGAGGATCACCATACATTTA
EST: ATGACTGCTACCTAAATGAGCCTGCAATTGATACTGTGAAGAGAATGAAG CTTTATTCGGAGTCTATTGCACGTTTTCAAGGAGGATCACCATACATTTATEST: gi|33406756|gb|CF212383.1|CF212383
genomic: ATGACTGCTACCTAAATGAGCCTGCAATTGATACTGTGAAGAGAATGAAGgtgaaaaatg ... tatgtgatagCTTTATTCGGAGTCTATTGCACGTTTTCAAGGAGGATCACCATACATTTAT
EST: ATGACTGCTACCTAAATGAGCCTGCAATTGATACTGTGAAGAGAATGAAG CTTTATTCGGAGTCTATTGCACGTTTTCAAGGAGGATCACCATACATTTATEST: gi|37183843|gb|CF603197.1|CF603197
genomic: ATGACTGCTACCTAAATGAGCCTGCAATTGATACTGTGAAGAGAATGAAGgtgaaaaatg ... tatgtgatagCTTTATTCGGAGTCTATTGCACGTTTTCAAGGAGGATCACCATACATTTAT
EST: CCTAAATGAGCCTGCAATTGATACTGTGAAGAGAATGAAG CTTTATTCGGAGTCTATTGCACGTTTTCAAGGAGGATCACCATACATTTATEST: gi|110690999|gb|EE068597.1|EE068597
genomic: CCTAAATGAGCCTGCAATTGATACTGTGAAGAGAATGAAGgtgaaaaatg ... tatgtgatagCTTTATTCGGAGTCTATTGCACGTTTTCAAGGAGGATCACCATACATTTAT
EST: TGACTGCTACCTAAATGACGC-TGCAATTGATACCGTGAAAAGAATGAAA CTTTATTCGGAG
genomic: TGACTGCTACCTAAATGA-GCCTGCAATTGATACTGTGAAGAGAATGAAGgtgaaaaatg ... tatgtgatagCTTTATTCGGAG
agttccatcatttttgtgagcttccatgaagttcttccttttgactatgtgatagCTTTATTCGGAGTCTATTGCACGTTTTCAAGGAGGATCACCATACATTTATCCCTTGTATGGGTTAGGAGAGCTGCCCCAG
ttttgac putative branch site (score: 3)
ttcttccttttgact CT-rich tract
atcattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaaaatgcatagggttcatattatacttctttcccttggttttgaattccctcacaatagaagttccatcatttttgtgagcttccatgaagttcttccttttgactatgtgatagCTTTATTCGGAGTCTATTGCACGTTTTCAAGGAGGATCACCATACATTTATCCCTTGTATGGGTTAGGAGAGCTGCCCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC