Sequence
atgc intronic sequence ATGC exonic sequencegtaagtgttacattttattactcactttgtcagacagctcctttatattccatcttatgcatttaagacccaagaacttgaaacacgcatgtgttgttccagTCATCCATCTCCATCAGTGCTCATTCCTGCCCTTCGCACAGTTGGAAACATTGTGACAGGAGACGATATCCAGACTCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0077g01430.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA09G04430.1 (Glycine max), 3'ss of exon 6
gtaagtgttacattttattactcactttgtcagacagctcctttatattccatcttatgcatttaagacccaagaacttgaaacacgcatgtgttgttccagTCATCCATCTCCATCAGTGCTCATTCCTGCCCTTCGCACAGTTGGAAACATTGTGACAGGAGACGATATCCAGACTCAG
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gtgagtattaaatct----act-acctggtcaatcaagattctattgtttcaattgttgattgtcttggccctcaacttg---tgtgcttgttttga---agGCACCCATCCCCTTCAGTGCTGATTCCTGCTCTTCGCACAGTGGGAAATATTGTGACAGGAGATGATATGCAGACTCAG
upper sequence: Vv05s0077g01430.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA15G15480.1 (Glycine max), 3'ss of exon 6
gtaagtgttacattttattactcactttgtcagacagctcctttatattccatcttatgcatttaagacccaagaacttgaaacacgcatgtgttgttccagTCATCCATCTCCATCAGTGCTCATTCCTGCCCTTCGCACAGTTGGAAACATTGTGACAGGAGACGATATCCAGACTCAG
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gtgagtattaaatct-actat--acctgttcaaccaagattctattgtttcaattgttgattgtcttggccctaaatttg---tgtgcttgttttga---agGCACCCATCCCCTTCAGTGCTGATTCCTGCTCTTCGCACAGTTGGAAATATTGTGACGGGAGATGATATGCAGACTCAG
upper sequence: Vv05s0077g01430.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: EFJ31557 (Selaginella moellendorffii), 3'ss of exon 6
gtaagtgttacattttattactcactttgtcagacagctcctttatattccatcttatgcatttaagacccaagaacttgaaacacgcatgtgttgttccagTCATCCATCTCCATCAGTGCTCATTCCTGCCCTTCGCACAGTTGGAAACATTGTGACAGGAGACGATATCCAGACTCAG
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------------------------------------------gtaagtcgtgtctt---tagctgtgactttt-aactgggctgacgttcctg--gttccagGTATCCTTCACCGAATGTTCTCATTCCTGCTCTTCGTACGGTGGGAAACATTGTGACTGGTGACGATGTCCAAACGCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttccatcttatgcatttaagacccaagaacttgaaacacgcatgtgttgttccagTCATCCATCTCCATCAGTGCTCATTCCTGCCCTTCGCACAGTTGGAAACATTGTGACAGGAGACGATATCCAGACTCAG
ttgttcc CT-rich tract
atttaaga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtgttacattttattactcactttgtcagacagctcctttatattccatcttatgcatttaagacccaagaacttgaaacacgcatgtgttgttccagTCATCCATCTCCATCAGTGCTCATTCCTGCCCTTCGCACAGTTGGAAACATTGTGACAGGAGACGATATCCAGACTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA