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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggagtatctctatgtaatgttttctggtagtgaacatttggaattgtacagctgtttgttgtttttctcggtcttccttgcaaagcagcagagtattaatttaaaatgagaaaccaaagtaacatgaaaaaataaaaatattgcagGAGAATGCTAGTAGGCAGTGGGATGATGTTGTTTTCATTCCACCTGGCTTTGATGCATCAATCAGTTCTCCCCAGCAACAGGCTACTGCAAATGGTTAGG

Basic information

species Vitis vinifera
transcript Vv05s0062g00220.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349816841|gb|FQ399709.1|FQ399709
EST:     GTTGCTGTCTTTGAGGAAATAAAAAAGGGGATGCAG                         GAGAATGCTAGTA
genomic: GTTGCTGTCTTTGAGGAAATAATAAAGGGGATGCAGgtaaggagta ... aatattgcagGAGAATGCTAGTA
EST: gi|110412506|gb|EC978256.1|EC978256
EST:     GTTGCTGTCTTTGAGGAAATAATAAAGGGGATGCAG                         GAGAATGCTAGTAGGCAGTGGGATGATGTTGTTTTCATTCCACCTGGCTTT
genomic: GTTGCTGTCTTTGAGGAAATAATAAAGGGGATGCAGgtaaggagta ... aatattgcagGAGAATGCTAGTAGGCAGTGGGATGATGTTGTTTTCATTCCACCTGGCTTT
EST: gi|110417406|gb|EC983458.1|EC983458
EST:     GTTGCTGTCTTTGAGGAAATAATAAAGGGGATGCAG                         GAGAATGCTAGTAGGCAGTGGGATGATGTTGTTTTCATTCCACCTGGCTTT
genomic: GTTGCTGTCTTTGAGGAAATAATAAAGGGGATGCAGgtaaggagta ... aatattgcagGAGAATGCTAGTAGGCAGTGGGATGATGTTGTTTTCATTCCACCTGGCTTT
EST: gi|349830095|gb|FQ420355.1|FQ420355
EST:     GTTGCTGTCTTTGAGGAAATAATAAAGGGGATGCAG                         GAGAATGCTAGTAGGCAGTGG
genomic: GTTGCTGTCTTTGAGGAAATAATAAAGGGGATGCAGgtaaggagta ... aatattgcagGAGAATGCTAGTAGGCAGTGG
EST: gi|110695067|gb|EE072660.1|EE072660
EST:     GTTGCTGTCTTTGAGGAAATAATAAAGGGGATGCAG                         GAGAATGCTAGTAGGCAGTGGGATGATGTTGTTTTCATTCCACCTGGCTTT
genomic: GTTGCTGTCTTTGAGGAAATAATAAAGGGGATGCAGgtaaggagta ... aatattgcagGAGAATGCTAGTAGGCAGTGGGATGATGTTGTTTTCATTCCACCTGGCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtattaatttaaaatgagaaaccaaagtaacatgaaaaaataaaaatattgcagGAGAATGCTAGTAGGCAGTGGGATGATGTTGTTTTCATTCCACCTGGCTTTGATGCATCAATCAGTTCTCCCCAGCAACAGGCTACTGCAAATGGTTAGG
                         aagtaac  putative branch site (score: 2)
                        aaagtaacatgaaaaa  TA-rich tract