Sequence
atgc intronic sequence ATGC exonic sequence...aatgctcccagcataatgttctttatagagttacgaatttgtagagagttagtactaatggtgcagagtttgccttggctttgatattattctgatacagGAAATCTGGCGATCAGGGTATATCATCATGGGGTTGGAATTTGAGTGGTCAGCATTCTACTTATCATGCTCTCTTTCCAAGGGCCTGGACAATATATGAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0051g00910.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA20G33990.1 (Glycine max), 3'ss of exon 6
---aatgct---cccagcataatgttctttatagagttacga---atttgtagagagttagtactaatggtgcagagtttgccttggctttgatattattctgatacagGAAATCTGGCGATCAGGGTATATCATCATGGGGTTGGAATTTGAGTGGTCAGCATTCTACTTATCATGCTCTCTTTCCAAGGGCCTGGACAATATATGAT
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ctgaattctagattctgcttagggttttttttccgggtgcatttcatatatctagatacatatacatcaactcaatttttcatgttaatttgtttttcagATCTAGCAGGAAACCTGATGATCAGGGCATATCATCATGGGGTTGGAATCTAAGTGGCCAGCACTCAACCTACCACGCTTTGTTTCCAAGAGCTTGGACA---------
upper sequence: Vv05s0051g00910.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT3G24180.2 (Arabidopsis thaliana), 3'ss of exon 8
aatgctcccagcataatgttctttatagagttacgaatttgtagagagttagtactaatggtgcagagtttgccttggctttgatattattctgatacagGAAATCTGGCGATCAGGGTATATCATCATGGGGTTGGAATTTGAGTGGTCAGCATTCTACTTATCATGCTCTCTTTCCAAGGGCCTGGACAATATATGAT
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---------gtaaaaatctgttttataaatatcctctaattcaatgatgcaatttttttcttaattcacataccttagatt-ggtttcatcgt--ctcagAAAGTCGCGTGATAAAGGTCTTTCTTCATGGGGCTGGAATCTGAATGGCCAGCATTCAACTTATCATGCTCTATTTCCTCGGGCTTGGACTATATATGAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gagttagtactaatggtgcagagtttgccttggctttgatattattctgatacagGAAATCTGGCGATCAGGGTATATCATCATGGGGTTGGAATTTGAGTGGTCAGCATTCTACTTATCATGCTCTCTTTCCAAGGGCCTGGACAATATATGAT
ttattct CT-rich tract
tttgatattattct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aatgctcccagcataatgttctttatagagttacgaatttgtagagagttagtactaatggtgcagagtttgccttggctttgatattattctgatacagGAAATCTGGCGATCAGGGTATATCATCATGGGGTTGGAATTTGAGTGGTCAGCATTCTACTTATCATGCTCTCTTTCCAAGGGCCTGGACAATATATGAT
- -gctccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgca