1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttctaatgtgatcttcaagtagttatctctttctattcatttacttgtacagttgttatatccctctcttttaggtcctaatctgtcattccaaacacagGTTGTGAATTCTACATATGCTCTATGGACTTGGCACAGGAATCAGGATATTTACAAGAGGAAAAGCCGCGGTGACCAAATATACATCGTACGACAACCTC
species | Vitis vinifera |
transcript | Vv05s0051g00640.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAGAGTGGAGTGCATTTAGAGAAAGCAGCTTTGGGCATGGAATACTTGAG GTTGTGAATTCTACATATGCTTTATGGACTTGGCACAGGAATCAGGATATTEST: gi|110422457|gb|EC988782.1|EC988782
genomic: CAGAGTGGAGTGCATTTAGAGAAAGCAGCTTTGGGCATGGAATACTTGAGgtaaaatata ... ccaaacacagGTTGTGAATTCTACATATGCTCTATGGACTTGGCACAGGAATCAGGATATT
EST: TTTGGGCATGGAATACTTGAG GTTGTGAATTCTACATATGCTTTATGGACTTGGCACAGGAATCAGGATATT
genomic: TTTGGGCATGGAATACTTGAGgtaaaatata ... ccaaacacagGTTGTGAATTCTACATATGCTCTATGGACTTGGCACAGGAATCAGGATATT
tgtacagttgttatatccctctcttttaggtcctaatctgtcattccaaacacagGTTGTGAATTCTACATATGCTCTATGGACTTGGCACAGGAATCAGGATATTTACAAGAGGAAAAGCCGCGGTGACCAAATATACATCGTACGACAACCTC
tcctaat putative branch site (score: 2)
tcattcc putative PPT
ttgttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctaatgtgatcttcaagtagttatctctttctattcatttacttgtacagttgttatatccctctcttttaggtcctaatctgtcattccaaacacagGTTGTGAATTCTACATATGCTCTATGGACTTGGCACAGGAATCAGGATATTTACAAGAGGAAAAGCCGCGGTGACCAAATATACATCGTACGACAACCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - tcaagta
- - - - - - - - - - - - - - - - - - -catttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgtcat